Sodium in PDB 1gv5: Crystal Structure of C-Myb R2

The structure of Crystal Structure of C-Myb R2, PDB code: 1gv5 was solved by T.H.Tahirov, K.Ogata, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	14.26 / 1.58
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	28.832, 40.182, 49.229, 90.00, 90.00, 90.00
R / Rfree (%)	17.8 / 19

The binding sites of Sodium atom in the Crystal Structure of C-Myb R2 (pdb code 1gv5). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of C-Myb R2, PDB code: 1gv5:

Sodium binding site 1 out of 1 in the Crystal Structure of C-Myb R2


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of C-Myb R2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1142 b:17.1 occ:1.00 O A:ALA119 2.4 14.9 1.0 O A:ARG125 2.4 15.8 1.0 O A:HOH2024 2.4 27.4 1.0 O A:LEU122 2.4 20.8 1.0 O A:HOH2029 2.5 31.1 1.0 O A:HOH2025 2.5 34.3 1.0 C A:ALA119 3.4 16.1 1.0 C A:LEU122 3.5 18.5 1.0 C A:ARG125 3.5 12.0 1.0 N A:ARG125 3.8 14.4 1.0 CA A:ARG125 4.1 13.2 1.0 N A:LYS120 4.2 15.0 1.0 CA A:LYS120 4.3 18.5 1.0 CB A:ALA119 4.3 13.6 1.0 CA A:ALA119 4.3 12.2 1.0 N A:LEU122 4.3 18.5 1.0 N A:LYS123 4.3 17.6 1.0 N A:GLY124 4.3 15.4 1.0 CA A:LEU122 4.3 16.6 1.0 CA A:LYS123 4.4 16.3 1.0 C A:LYS120 4.5 21.5 1.0 CB A:ARG125 4.6 13.2 1.0 C A:LYS123 4.6 15.2 1.0 N A:ILE126 4.6 11.6 1.0 O A:LYS120 4.7 21.2 1.0 CB A:LEU122 4.7 16.9 1.0 O A:HOH2028 4.9 35.5 1.0 C A:GLY124 4.9 14.7 1.0 CA A:ILE126 4.9 11.8 1.0

T.H.Tahirov, H.Morii, H.Uedaira, M.Sasaki, A.Sarai, S.Adachi, S.Y.Park, N.Kamiya, K.Ogata. Crystal Structure of C-Myb Dna-Binding Domain: Specific Na+ Binding and Correlation with uc(Nmr) Structure To Be Published.