Sodium in PDB, part 308 (files: 12281-12320),
PDB 9h0n-9ice
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 12281-12320 (PDB 9h0n-9ice).
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9h0n (Na: 1) - Fucosylated Lacto-N-Biose Binding Protein From Bifidobacterium Longum Subsp. Infantis in Complex with Galacto-N-Biose
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9h0o (Na: 2) - Fucosylated Lacto-N-Biose Binding Protein From Bifidobacterium Longum Subsp. Infantis in Complex with Lacto-N-Biose
Other atoms:
Ca (1);
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9h0s (Na: 3) - Scaffold-Ligand Complex
Other atoms:
Br (1);
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9h3e (Na: 1) - Hen Egg White Lysozyme Crystallization and Structure Determination at Room Temperature in the Crystalchip
Other atoms:
Cl (3);
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9h7z (Na: 6) - Aspergillus Niger Glucose Oxidase Bound to BA2+ Ions
Other atoms:
Ba (12);
Cl (10);
Br (3);
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9hae (Na: 3) - Dust Mite Allergen Der F 7 with Computationally Designed DERF7_B2 Binder
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9hav (Na: 4) - F420-Dependent Glucose-6-Phosphate Dehydrogenase From Thermomicrobium Roseus with Glucose
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9hco (Na: 2) - Outward-Open Structure of Human Serotonin Transporter Bound to Vilazodone
Other atoms:
Cl (1);
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9he5 (Na: 2) - Crystal Structure of the Oxidized Respiratory Complex I Subunit Nuoef From Aquifex Aeolicus, Mutation V90P(Nuoe)
Other atoms:
Fe (12);
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9heg (Na: 3) - Crystal Structure of the Oxidized Respiratory Complex I Subunit Nuoef From Aquifex Aeolicus, Mutation V136M(Nuoe)
Other atoms:
Fe (12);
Cl (6);
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9hem (Na: 1) - Crystal Structure of the Oxidized Respiratory Complex I Subunit Nuoef From Aquifex Aeolicus, Mutation V136M(Nuoe), Bound to Nad+
Other atoms:
Fe (12);
Cl (6);
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9hen (Na: 3) - Crystal Structure of the Oxidized Respiratory Complex I Subunit Nuoef From Aquifex Aeolicus, Double Mutation V90P and V136M(Nuoe), Bound to Nad+
Other atoms:
Cl (1);
Fe (12);
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9hfu (Na: 1) - CAPRIN1 Peptide Bound to Spop Math Domain
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9hi4 (Na: 2) - Structure of FI6-Focused DESIGN_03 Scaffold in Complex with FI6-Fab
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9hj9 (Na: 1) - H1-H3 Chimeric Hemagglutinin
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9hud (Na: 2) - Alpha-1-Antitrypsin in the Cleaved Conformation in Complex with A Conformationally Nonselective Fab Fragment
Other atoms:
Cl (2);
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9huo (Na: 2) - A01 Mabs Bound to Cobratoxin at pH 5.5
Other atoms:
K (1);
Cl (1);
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9hur (Na: 1) - Crystal Structure of Tetraspanin CD63MUTANT Large Extracellular Loop (Lel) in Complex with Sybody LA4
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9hxo (Na: 1) - A01 Mabs Bound to Cobratoxin at pH 6.0
Other atoms:
Cl (1);
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9hy1 (Na: 2) - Sc-4E (Scfv Derived From the Mab 4E1 Against CD93) Crystallized at pH 7.5 (Dimeric State From Gel Filtration)
Other atoms:
Cl (2);
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9hy2 (Na: 2) - Sc-4E (Scfv Derived From the Mab 4E1 Against CD93) Crystallized at pH 7.5 (Monomeric State From Gel Filtration)
Other atoms:
Cl (2);
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9hy3 (Na: 2) - Sc-4E (Scfv Derived From the Mab 4E1 Against CD93) Crystallized at pH 5.5
Other atoms:
Cl (4);
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9hy5 (Na: 2) - Sc-4E (Scfv Derived From the Mab 4E1 Against CD93) Crystallized at pH 9.0
Other atoms:
Cl (6);
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9hyg (Na: 4) - Crystal Structure of Zebrafish S100I1 in Na+-Bound Form
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9i24 (Na: 1) - Coagulation Factor Xa Complex with A2-Loop Peptide
Other atoms:
Ca (1);
Cl (1);
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9i2i (Na: 1) - X-Ray Structure of the B1 Domain of Streptococcal Protein G Triple Mutant T2Q, N8D, and N37D (GB1-Qdd).
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9i2p (Na: 2) - Crystal Structure of Listeria Monocytogenes Chia
Other atoms:
Ca (2);
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9i6h (Na: 5) - Room Temperature Structure of KR2 Rhodopsin in Pentameric Form at 95% Relative Humidity
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9i6i (Na: 5) - Room-Temperature Structure of KR2 Rhodopsin in Pentameric Form at 85% Relative Humidity
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9i6j (Na: 1) - Hen Egg-White Lysozyme Structure Embedded in Lcp Medium at 95% Relative Humidity
Other atoms:
Cl (5);
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9i6k (Na: 1) - Hen Egg-White Lysozyme Structure at 85% Relative Humidity
Other atoms:
Cl (5);
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9i6l (Na: 1) - Hen Egg-White Lysozyme Structure at 75% Relative Humidity
Other atoms:
Cl (5);
-
9i6m (Na: 1) - Hen Egg-White Lysozyme Structure at 65% Relative Humidity
Other atoms:
Cl (5);
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9i6n (Na: 1) - Hen Egg-White Lysozyme Structure Collected at Euxfel Spb/Sfx with Hve Injection Method
Other atoms:
Cl (3);
-
9i6o (Na: 1) - Hen Egg-White Lysozyme Structure Embedded in Lcp Medium at 95% Relative Humidity
Other atoms:
Cl (4);
-
9i6p (Na: 1) - Hen Egg-White Lysozyme Structure Embedded in Lcp Medium at 85% Relative Humidity
Other atoms:
Cl (4);
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9ib6 (Na: 1) - Apo Form of Tumor Necrosis Factor-Like Lectin Pltl From Photorhabdus Laumondii
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9icb (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex + 2'- Deoxyadenosine-5'-Triphosphate, Soaked in the Presence of Datp and COCL2
Other atoms:
Co (2);
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9icc (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex + 2'- Deoxyadenosine-5'-Triphosphate, Soaked in the Presence of Datp and CRCL3
Other atoms:
Cr (1);
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9ice (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Datp (1 Millimolar) and CUCL2 (0.1 Millimolar)
Page generated: Mon Dec 15 11:18:56 2025
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