Atomistry » Sodium » PDB 8vjt-8vnq
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Sodium in PDB, part 298 (files: 11881-11920), PDB 8vjt-8vnq

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 11881-11920 (PDB 8vjt-8vnq).
  1. 8vjt (Na: 2) - Structure of the Poly-Ug Quadruplex (Gugugu)4
    Other atoms: K (7);
  2. 8vju (Na: 2) - Structure of Human Neurolysin in Complex with Dynorphin A13 Peptide
    Other atoms: Zn (2); Cl (1);
  3. 8vl8 (Na: 10) - Salmonella Enterica Typhimurium Taxis to Serine and Repellents (Tsr) Ligand-Binding Domain with L-Ser, pH 7
    Other atoms: K (1); Cl (7);
  4. 8vlj (Na: 1) - Crystal Structure of the Cacodylate-Bound Yeast Cytosine Deaminase (Closed Form)
    Other atoms: As (2); Zn (2);
  5. 8vme (Na: 1) - Crystal Structure of the Gsk-3/Axin Complex Bound to A Phosphorylated Beta-Catenin T41A Peptide
    Other atoms: Mg (2);
  6. 8vmo (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Ground State at PH7.0 (K+ Mes) with Na+
    Other atoms: Zn (4);
  7. 8vmp (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH7.0 (K+ Mes) with 500 Um MG2+ For 10S
    Other atoms: Zn (4);
  8. 8vmq (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH7.0 (K+ Mes) with 500 Um MG2+ For 20S
    Other atoms: Mg (1); Zn (4);
  9. 8vmr (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH7.0 (K+ Mes) with 500 Um MG2+ For 40S
    Other atoms: Zn (4); Mg (1);
  10. 8vms (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH7.0 (K+ Mes) with 500 Um MG2+ For 80S
    Other atoms: Mg (2); Zn (4);
  11. 8vmt (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH7.0 (K+ Mes) with 500 Um MG2+ For 160S
    Other atoms: Zn (4); Mg (2);
  12. 8vmu (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH7.0 (K+ Mes) with 500 Um MG2+ For 320S
    Other atoms: Zn (4); Mg (2);
  13. 8vmv (Na: 1) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH7.0 (K+ Mes) with 500 Um MG2+ For 600S
    Other atoms: Mg (2); Zn (4);
  14. 8vmw (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Ground State at PH6.0 (K+ Mes) with Na+
    Other atoms: Zn (4);
  15. 8vmx (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH6.0 (K+ Mes) with 500 Um MG2+ For 10S
    Other atoms: Zn (4);
  16. 8vmy (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH6.0 (K+ Mes) with 500 Um MG2+ For 20S
    Other atoms: Mg (1); Zn (4);
  17. 8vmz (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH6.0 (K+ Mes) with 500 Um MG2+ For 40S
    Other atoms: Mg (2); Zn (4);
  18. 8vn0 (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH6.0 (K+ Mes) with 500 Um MG2+ For 80S
    Other atoms: Zn (4); Mg (2);
  19. 8vn1 (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH6.0 (K+ Mes) with 500 Um MG2+ For 160S
    Other atoms: Zn (4); Mg (2);
  20. 8vn2 (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH6.0 (K+ Mes) with 500 Um MG2+ For 320S
    Other atoms: Zn (4); Mg (2);
  21. 8vn3 (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH6.0 (K+ Mes) with 500 Um MG2+ For 600S
    Other atoms: Zn (4); Mg (2);
  22. 8vn4 (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH6.0 (K+ Mes) with 500 Um MG2+ For 1200S
    Other atoms: Mg (2); Zn (4);
  23. 8vn5 (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Ground State at PH8.0 (Tris) with Na+
    Other atoms: Zn (4);
  24. 8vn6 (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH8.0 (Tris) with 500 Um MG2+ For 10S
    Other atoms: Zn (4); Mg (2);
  25. 8vn7 (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH8.0 (Tris) with 500 Um MG2+ For 20S
    Other atoms: Mg (2); Zn (4);
  26. 8vn8 (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH8.0 (Tris) with 500 Um MG2+ For 40S
    Other atoms: Mg (2); Zn (4);
  27. 8vn9 (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH8.0 (Tris) with 500 Um MG2+ For 80S
    Other atoms: Zn (4); Mg (2);
  28. 8vna (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH8.0 (Tris) with 500 Um MG2+ For 160S
    Other atoms: Zn (4); Mg (2);
  29. 8vne (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH6.0 (K+ Mes) with 500 Um MN2+ For 10S
    Other atoms: Zn (4); Mn (2);
  30. 8vnf (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH6.0 (K+ Mes) with 500 Um MN2+ For 20S
    Other atoms: Zn (4); Mn (2);
  31. 8vng (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH6.0 (K+ Mes) with 500 Um MN2+ For 40S
    Other atoms: Zn (4); Mn (2);
  32. 8vnh (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH6.0 (K+ Mes) with 500 Um MN2+ For 80S
    Other atoms: Mn (2); Zn (4);
  33. 8vnj (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH6.0 (K+ Mes) with 500 Um MN2+ For 120S
    Other atoms: Mn (2); Zn (4);
  34. 8vnk (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH6.0 (K+ Mes) with 500 Um MN2+ For 160S
    Other atoms: Mn (2); Zn (4);
  35. 8vnl (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH6.0 (K+ Mes) with 500 Um MN2+ For 240S
    Other atoms: Mn (2); Zn (4);
  36. 8vnm (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH6.0 (K+ Mes) with 500 Um MN2+ For 320S
    Other atoms: Mn (2); Zn (4);
  37. 8vnn (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH6.0 (K+ Mes) with 500 Um MN2+ For 480S
    Other atoms: Zn (4); Mn (2);
  38. 8vno (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH6.0 (K+ Mes) with 500 Um MN2+ For 600S
    Other atoms: Mn (2); Zn (4);
  39. 8vnp (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex at PH6.0 (K+ Mes) with 0.2 M Sodium Malonate
    Other atoms: Zn (4);
  40. 8vnq (Na: 2) - Homing Endonuclease H98A I-Ppoi-Dna Complex at PH6.0 (K+ Mes) with 1 Mm MN2+ For 1800S
    Other atoms: Zn (4);
Page generated: Sat Aug 23 06:32:41 2025

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