Sodium in PDB, part 298 (files: 11881-11920),
PDB 8vlj-8vnu
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 11881-11920 (PDB 8vlj-8vnu).
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8vlj (Na: 1) - Crystal Structure of the Cacodylate-Bound Yeast Cytosine Deaminase (Closed Form)
Other atoms:
As (2);
Zn (2);
-
8vme (Na: 1) - Crystal Structure of the Gsk-3/Axin Complex Bound to A Phosphorylated Beta-Catenin T41A Peptide
Other atoms:
Mg (2);
-
8vmo (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Ground State at PH7.0 (K+ Mes) with Na+
Other atoms:
Zn (4);
-
8vmp (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH7.0 (K+ Mes) with 500 Um MG2+ For 10S
Other atoms:
Zn (4);
-
8vmq (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH7.0 (K+ Mes) with 500 Um MG2+ For 20S
Other atoms:
Mg (1);
Zn (4);
-
8vmr (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH7.0 (K+ Mes) with 500 Um MG2+ For 40S
Other atoms:
Zn (4);
Mg (1);
-
8vms (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH7.0 (K+ Mes) with 500 Um MG2+ For 80S
Other atoms:
Mg (2);
Zn (4);
-
8vmt (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH7.0 (K+ Mes) with 500 Um MG2+ For 160S
Other atoms:
Zn (4);
Mg (2);
-
8vmu (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH7.0 (K+ Mes) with 500 Um MG2+ For 320S
Other atoms:
Zn (4);
Mg (2);
-
8vmv (Na: 1) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH7.0 (K+ Mes) with 500 Um MG2+ For 600S
Other atoms:
Mg (2);
Zn (4);
-
8vmw (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Ground State at PH6.0 (K+ Mes) with Na+
Other atoms:
Zn (4);
-
8vmx (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH6.0 (K+ Mes) with 500 Um MG2+ For 10S
Other atoms:
Zn (4);
-
8vmy (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH6.0 (K+ Mes) with 500 Um MG2+ For 20S
Other atoms:
Mg (1);
Zn (4);
-
8vmz (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH6.0 (K+ Mes) with 500 Um MG2+ For 40S
Other atoms:
Mg (2);
Zn (4);
-
8vn0 (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH6.0 (K+ Mes) with 500 Um MG2+ For 80S
Other atoms:
Zn (4);
Mg (2);
-
8vn1 (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH6.0 (K+ Mes) with 500 Um MG2+ For 160S
Other atoms:
Zn (4);
Mg (2);
-
8vn2 (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH6.0 (K+ Mes) with 500 Um MG2+ For 320S
Other atoms:
Zn (4);
Mg (2);
-
8vn3 (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH6.0 (K+ Mes) with 500 Um MG2+ For 600S
Other atoms:
Zn (4);
Mg (2);
-
8vn4 (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH6.0 (K+ Mes) with 500 Um MG2+ For 1200S
Other atoms:
Mg (2);
Zn (4);
-
8vn5 (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Ground State at PH8.0 (Tris) with Na+
Other atoms:
Zn (4);
-
8vn6 (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH8.0 (Tris) with 500 Um MG2+ For 10S
Other atoms:
Zn (4);
Mg (2);
-
8vn7 (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH8.0 (Tris) with 500 Um MG2+ For 20S
Other atoms:
Mg (2);
Zn (4);
-
8vn8 (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH8.0 (Tris) with 500 Um MG2+ For 40S
Other atoms:
Mg (2);
Zn (4);
-
8vn9 (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH8.0 (Tris) with 500 Um MG2+ For 80S
Other atoms:
Zn (4);
Mg (2);
-
8vna (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH8.0 (Tris) with 500 Um MG2+ For 160S
Other atoms:
Zn (4);
Mg (2);
-
8vne (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH6.0 (K+ Mes) with 500 Um MN2+ For 10S
Other atoms:
Zn (4);
Mn (2);
-
8vnf (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH6.0 (K+ Mes) with 500 Um MN2+ For 20S
Other atoms:
Zn (4);
Mn (2);
-
8vng (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH6.0 (K+ Mes) with 500 Um MN2+ For 40S
Other atoms:
Zn (4);
Mn (2);
-
8vnh (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH6.0 (K+ Mes) with 500 Um MN2+ For 80S
Other atoms:
Mn (2);
Zn (4);
-
8vnj (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH6.0 (K+ Mes) with 500 Um MN2+ For 120S
Other atoms:
Mn (2);
Zn (4);
-
8vnk (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH6.0 (K+ Mes) with 500 Um MN2+ For 160S
Other atoms:
Mn (2);
Zn (4);
-
8vnl (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH6.0 (K+ Mes) with 500 Um MN2+ For 240S
Other atoms:
Mn (2);
Zn (4);
-
8vnm (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH6.0 (K+ Mes) with 500 Um MN2+ For 320S
Other atoms:
Mn (2);
Zn (4);
-
8vnn (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH6.0 (K+ Mes) with 500 Um MN2+ For 480S
Other atoms:
Zn (4);
Mn (2);
-
8vno (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH6.0 (K+ Mes) with 500 Um MN2+ For 600S
Other atoms:
Mn (2);
Zn (4);
-
8vnp (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex at PH6.0 (K+ Mes) with 0.2 M Sodium Malonate
Other atoms:
Zn (4);
-
8vnq (Na: 2) - Homing Endonuclease H98A I-Ppoi-Dna Complex at PH6.0 (K+ Mes) with 1 Mm MN2+ For 1800S
Other atoms:
Zn (4);
-
8vnr (Na: 2) - Homing Endonuclease H98A I-Ppoi-Dna Complex at PH6.0 (K+ Mes) with 1 Mm MN2+ For 600S and Then 100 Mm Imidazole For 15 Hrs
Other atoms:
Zn (4);
-
8vns (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH6.0 (K+ Mes) with 200 Mm MN2+ For 600S
Other atoms:
Mn (2);
Zn (4);
-
8vnu (Na: 2) - Homing Endonuclease H98A I-Ppoi-Dna Complex at PH6.0 (K+ Mes) with 70 Mm Tl+ For 1800S
Other atoms:
Zn (4);
Tl (2);
Page generated: Mon Dec 15 11:18:33 2025
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