Sodium in PDB, part 292 (files: 11641-11680),
PDB 8rop-8s9w
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 11641-11680 (PDB 8rop-8s9w).
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8rop (Na: 1) - Crystal Structure of Hla B*18:01 in Complex with Qeirtfsf, An 8-Mer Epitope From Influenza A
Other atoms:
Cl (2);
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8rov (Na: 2) - Human Dectin-2 with Dimerization Domain
Other atoms:
Ca (4);
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8rpl (Na: 1) - Amp-Forming Acetyl-Coa Synthetase From Chloroflexota Bacterium with Bound Acetyl Amp
Other atoms:
Mg (3);
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8rpm (Na: 1) - Lysozyme Structure Based on Automated Real-Time Serial Crystallography Data Processing Using Crystfel
Other atoms:
Cl (2);
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8rq5 (Na: 5) - Cryo-Em Structure of the Light-Driven Sodium-Pumping Rhodopsin KR2
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8rqz (Na: 1) - Crystal Structure of Molybdenum Bispyranopterin Guanine Dinucleotide Formate Dehydrogenases FORCE1 From Bacillus Subtilis
Other atoms:
Fe (36);
Mo (2);
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8rs4 (Na: 2) - Flavin-Dependent Tryptophan 6-Halogenase Thal in Complex with Tryptoline
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8rsh (Na: 2) - Lysozyme Measured Via Serial Crystallography From A Silicon Hare Chip
Other atoms:
Cl (1);
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8rtg (Na: 1) - Desulfovibrio Desulfuricans [Fefe] Hydrogenase in Apo Form
Other atoms:
Fe (12);
Cl (1);
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8rtl (Na: 4) - Af Aio C65F-C80G
Other atoms:
Fe (20);
Mo (4);
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8rtm (Na: 4) - Af Aio C65F-C80G Bound to Sb Oxyanion
Other atoms:
Mo (4);
Fe (20);
Sb (4);
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8rtn (Na: 1) - Human Thrombin in Complex with A Trivalent Inhibitor
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8ru1 (Na: 7) - Chromatin Remodeling Regulator CECR2 with in Crystallo Disulfide Bond
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8ru4 (Na: 2) - Crystal Structure of Human Catenin Beta-1 in Complex with Stitched Peptide Inhibitor
Other atoms:
Cl (1);
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8ruk (Na: 4) - Structure of Oceanobacillus Iheyensis Group II Intron in the Presence of Na+, MG2+, and ARN25850
Other atoms:
Mg (10);
Br (2);
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8rus (Na: 1) - Hen Egg-White Lysozyme (Hewl) Structure From Euxfel Fxe, Multi-Hit Droplet-on-Demand (Dod) Injection, 9.3 Kev Photon Energy, Space Group P432121
Other atoms:
Cl (3);
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8rvc (Na: 4) - Crystal Structure of Alpha Keto Acid C-Methyl-Transferases Mrsa Bound to Ketoarginine
Other atoms:
Mg (4);
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8rvs (Na: 4) - Crystal Structure of Alpha Keto Acid C-Methyl-Transferases Mrsa Bound to Sam
Other atoms:
Mg (2);
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8rw0 (Na: 1) - Crystal Structure of the Adenosine A2A Receptor in Complex with Istradefylline
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8rwl (Na: 2) - Crystal Structure of Methanopyrus Kandleri Malate Dehydrogenase Mutant 1
Other atoms:
Cl (3);
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8rwm (Na: 1) - Crystal Structure of Selenomethionine Derivatized Alpha Keto Acid C- Methyl-Transferases Mrsa
Other atoms:
Mg (3);
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8ryf (Na: 2) - Azej in Complex with Mta and Aze From Pseudomonas Aeruginosa (P4(2)22)
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8ryz (Na: 1) - Structures of Selenoneine Synthase Sena From Variovorax Paradoxus
Other atoms:
Ni (1);
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8rzk (Na: 4) - The Michaelis Complex of ZGGH129 D486N From Zobellia Galactanivorans with Neo-B/K-Oligo-Carrageenan Tetrasaccharide (Beta-Kappa Neo-Oligo- Carrageenan DP4).
Other atoms:
Cl (4);
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8s05 (Na: 2) - Arnab Complex An Archaeal Ortholog of the SEC23/24 Core Motif
Other atoms:
Zn (2);
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8s1c (Na: 12) - Intertwined Dimer of the PTK6 SH3 Domain
Other atoms:
Cl (4);
-
8s2y (Na: 4) - Crystal Structure of Alcohol Oxidase PAAOX1 From Picea Abies
Other atoms:
Ca (1);
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8s38 (Na: 2) - Crystal Structure of Medicago Truncatula Glutamate Dehydrogenase 2 in Complex with Citrate and Nad
Other atoms:
Ca (3);
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8s39 (Na: 2) - Crystal Structure of Medicago Truncatula Glutamate Dehydrogenase 2 in Complex with Isophthalic Acid and Nad
Other atoms:
Ca (3);
-
8s3a (Na: 8) - Crystal Structure of Medicago Truncatula Glutamate Dehydrogenase 2 in Complex with 2,6-Pyridinedicarboxylic Acid and Nad
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8s3c (Na: 2) - Crystal Structure of Medicago Truncatula Glutamate Dehydrogenase 2 (Unliganded)
Other atoms:
Ca (3);
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8s3d (Na: 3) - Crystal Structure of Medicago Truncatula Glutamate Dehydrogenase 2 in Complex with 2-Amino-2-Hydroxyglutarate (Reaction Intermediate) and Nad
Other atoms:
Ca (6);
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8s46 (Na: 1) - Cdaa-E01 Complex
Other atoms:
Cl (1);
-
8s49 (Na: 2) - Cdaa-B06 Complex
Other atoms:
F (1);
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8s4j (Na: 5) - Structure, Substrate Selectivity Determinants and Membrane Interactions of A Glutamate-Specific Taxi Trap Binding Protein From Vibrio Cholerae.
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8s6e (Na: 1) - Monoclonal Antibody Menw Targeting Serogroup W of Neisseria Meningitidis
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8s6j (Na: 3) - Navms in Complex with Riluzole
Other atoms:
F (3);
Cl (2);
-
8s6q (Na: 1) - Rosc
Other atoms:
I (5);
-
8s87 (Na: 2) - Kod-H4 Dna Polymerase Mutant - Apo Structure
Other atoms:
Mg (9);
-
8s9w (Na: 2) - Murine S100A7/S100A15 in Presence of Calcium
Other atoms:
Ca (4);
Page generated: Mon Dec 15 11:18:19 2025
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