Sodium in PDB, part 290 (files: 11561-11600),
PDB 8qd5-8r11
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 11561-11600 (PDB 8qd5-8r11).
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8qd5 (Na: 1) - Anti SER245DHA (Psf)
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8qd6 (Na: 1) - Anti SER245DHA (Pmsf)
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8qeu (Na: 4) - Crystal Structure of Ornithine Transcarbamylase From Arabidopsis Thaliana (Atotc) in Complex with Ornithine
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8qev (Na: 1) - Crystal Structure of Ornithine Transcarbamylase From Arabidopsis Thaliana (Atotc) in Complex with Carbamoyl Phosphate
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8qg1 (Na: 2) - Crystal Structure of Oxidized Respiratory Complex I Subunits Nuoef From Aquifex Aeolicus Bound to Adp-Ribose
Other atoms:
Cl (1);
Fe (12);
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8qgw (Na: 8) - Crystal Structure of Oxidized Respiratory Complex I Subunits Nuoef From Aquifex Aeolicus Bound to Oxidized 3-Acetylpyridine Adenine Dinucleotide
Other atoms:
Fe (12);
Cl (1);
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8qh4 (Na: 8) - Crystal Structure of Reduced Respiratory Complex I Subunits Nuoef From Aquifex Aeolicus Bound to Oxidized 3-Acetylpyridine Adenine Dinucleotide
Other atoms:
Fe (12);
K (1);
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8qh7 (Na: 9) - Crystal Structure of Respiratory Complex I Subunits Nuoef From Aquifex Aeolicus Bound to Reduced 3-Acetylpyridine Adenine Dinucleotide (Without Reducing Agent)
Other atoms:
Fe (12);
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8qhk (Na: 2) - Crystal Structure of Reduced Respiratory Complex I Subunits Nuoef From Aquifex Aeolicus Bound to Reduced 3-Acetylpyridine Adenine Dinucleotide
Other atoms:
Fe (12);
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8qj6 (Na: 1) - Crystal Structure of Cytochrome Domain 1 From Pgca
Other atoms:
Fe (1);
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8qjk (Na: 1) - Structure of the Cytoplasmic Domain of CSX23 From Vibrio Cholera in Complex with Cyclic Tetra-Adenylate (CA4)
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8qjm (Na: 1) - SMNUC1 Nuclease From Stenotrophomonas Maltophilia in Complex with Cytidine-5'-Monophosphate
Other atoms:
Zn (6);
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8qjo (Na: 1) - SMNUC1 Nuclease From Stenotrophomonas Maltophilia in Complex with Guanosine-5'-Monophosphate
Other atoms:
Cl (1);
Zn (6);
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8qk0 (Na: 4) - Crystal Structure of Cytochrome Domain 3 From Pgca
Other atoms:
Fe (2);
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8qk4 (Na: 2) - Dehydratase Domain (Pksj DH1) From the Bacillaene Trans-at Pks
Other atoms:
Cl (1);
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8qnf (Na: 7) - Crystal Structure of the Condensation Domain Tombc From the Tomaymycin Non-Ribosomal Peptide Synthetase
Other atoms:
K (2);
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8qng (Na: 1) - Crystal Structure of the E3 Ubiquitin Ligase Cbl-B with An Allosteric Inhibitor (Benzodiazepine Hts Hit Compound 1)
Other atoms:
Zn (2);
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8qnh (Na: 1) - Crystal Structure of the E3 Ubiquitin Ligase Cbl-B with An Allosteric Inhibitor (WO2020264398 EX23)
Other atoms:
F (3);
Zn (2);
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8qni (Na: 1) - Crystal Structure of the E3 Ubiquitin Ligase Cbl-B with An Allosteric Inhibitor (Benzodiazepine Compound 25)
Other atoms:
Zn (2);
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8qop (Na: 2) - Capra Hircus Reactive Intermediate Deaminase A - K78A
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8qrd (Na: 6) - Olep in Complex with Testosterone in High Salt Crystallization Conditions
Other atoms:
Fe (6);
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8qro (Na: 9) - ASCT2 Trimer in Lipid Nanodiscs with Bound Glutamine and Na+ Ions in the Outward-Facing State (Ofs)
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8qrp (Na: 3) - ASCT2 Protomer in Lipid Nanodiscs with Bound Glutamine and Na+ Ions in the Outward-Facing State (Ofs.1)
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8qrq (Na: 3) - ASCT2 Protomer in Lipid Nanodiscs with Bound Glutamine and Na+ Ions in the Outward-Facing State (Ofs.2)
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8qrr (Na: 3) - ASCT2 Protomer in Lipid Nanodiscs with Bound Glutamine and Na+ Ions in the Outward-Facing State (Ofs.3)
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8qrv (Na: 1) - ASCT2 Protomer in Lipid Nanodiscs Under Low Na+ Concentration in the Outward-Facing State (Ofs)
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8qrw (Na: 1) - ASCT2 Protomer in Lipid Nanodiscs Under Low Na+ Concentration in the Intermediate Outward-Facing State (Iofs-Up)
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8qtf (Na: 10) - Crystal Structure of A C-Terminally Truncated Version of Arabidopsis Thaliana 14-3-3 Omega in Complex with A Phosphopeptide From the Transcription Factor BZR1.
Other atoms:
Cl (1);
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8qtg (Na: 1) - Crystal Structure of Cbl-B in Complex with An Allosteric Inhibitor (Compound 9)
Other atoms:
F (3);
Zn (2);
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8qth (Na: 1) - Crystal Structure of Cbl-B in Complex with An Allosteric Inhibitor (Compound 8)
Other atoms:
Zn (2);
F (3);
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8qtj (Na: 1) - Crystal Structure of Cbl-B in Complex with An Allosteric Inhibitor (Compound 30)
Other atoms:
F (3);
Zn (2);
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8qtk (Na: 1) - Crystal Structure of Cbl-B in Complex with An Allosteric Inhibitor (Compound 31)
Other atoms:
F (3);
Zn (2);
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8qu7 (Na: 1) - Crystal Structure of the Plasmodium Falciparum Apical Membrane Antigen (AMA1) in Complex with Single Domain I-Body WD34
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8qwr (Na: 2) - Crystal Structure of COTB2 Variant V80L
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8qyi (Na: 6) - Olep in Complex with Lithocholic Acid in High Salt Crystallization Conditions
Other atoms:
Fe (6);
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8qyt (Na: 1) - Human Pyridoxine-5'-Phosphate Oxidase in Complex with Plp
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8qza (Na: 2) - D-2-Hydroxyacid Dehydrogenase (D2-Hdh) From Haloferax Mediterranei Apo-Enzyme (2.25 A Resolution)
Other atoms:
Mg (5);
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8qzb (Na: 12) - D-2-Hydroxyacid Dehydrogenase (D2HDH) From Haloferax Mediterranei in Complex with 2-Ketohexanoic Acid, Nad+ and Chloride (1.16 A Resolution)
Other atoms:
Cl (4);
Mg (19);
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8qzg (Na: 1) - 1,3 L,D-Transpeptidase From Gluconobacter Oxydans
Other atoms:
Cl (1);
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8r11 (Na: 1) - Structure of Compound 7 Bound to Sars-Cov-2 Main Protease
Other atoms:
Cl (5);
Br (2);
Page generated: Mon Dec 15 11:18:15 2025
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