Sodium in PDB, part 272 (files: 10841-10880),
PDB 8a1n-8alm
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 10841-10880 (PDB 8a1n-8alm).
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8a1n (Na: 2) - Crystal Structure of the Transpeptidase LDTMT2 From Mycobacterium Tuberculosis in Complex with Fumaryl Amide Analogue 13
Other atoms:
Cl (1);
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8a1o (Na: 1) - Crystal Structure of the Transpeptidase LDTMT2 From Mycobacterium Tuberculosis in Complex with Acrylamide Analogue 8
Other atoms:
Cl (4);
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8a1t (Na: 1) - Sodium Pumping Nadh-Quinone Oxidoreductase
Other atoms:
K (1);
Fe (4);
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8a1u (Na: 2) - Sodium Pumping Nadh-Quinone Oxidoreductase with Substrates Nadh and Q2
Other atoms:
Fe (4);
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8a1v (Na: 2) - Sodium Pumping Nadh-Quinone Oxidoreductase with Substrate Q2
Other atoms:
Fe (4);
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8a1w (Na: 2) - Sodium Pumping Nadh-Quinone Oxidoreductase with Substrate Q1
Other atoms:
Fe (4);
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8a29 (Na: 5) - Apo 1-Deoxy-D-Xylulose 5-Phosphate Synthase From Pseudomonas Aeruginosa
Other atoms:
Mg (13);
Ca (12);
Cl (2);
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8a2o (Na: 1) - Room-Temperature Structure of the Stabilised A2A-Theophylline Complex Determined By Synchrotron Serial Crystallography
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8a2p (Na: 1) - Room-Temperature Structure of the Stabilised A2A-LUAA47070 Complex Determined By Synchrotron Serial Crystallography
Other atoms:
F (2);
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8a35 (Na: 4) - Nak C-Di Mutant with Rb+ and Na+
Other atoms:
Rb (4);
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8a3g (Na: 1) - X-Ray Crystal Structure of A De Novo Designed Antiparallel Coiled-Coil Homotetramer with 4 Heptad Repeats, Apcc-Tet*
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8a45 (Na: 4) - Structural Analysis of 1-Deoxy-D-Xylulose 5-Phosphate Synthase From Pseudomonas Aeruginosa with 2-Acetyl Thiamine Diphosphate
Other atoms:
Mg (6);
Ca (12);
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8a4d (Na: 5) - 1-Deoxy-D-Xylulose 5-Phosphate Synthase From Pseudomonas Aeruginosa with Thiamine Analog Inhibitor
Other atoms:
Ca (2);
Mg (11);
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8a4u (Na: 3) - Crystal Structure of Human Cathepsin L with CAA0225
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8a4w (Na: 1) - Crystal Structure of Human Cathepsin L with Covalently Bound Cathepsin L Inhibitor IV
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8a5b (Na: 4) - Crystal Structure of Human Cathepsin L in Complex with Covalently Bound Mg-101
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8a66 (Na: 2) - Crystal Structure of MST2 in Complex with Xmu-Mp-1
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8a67 (Na: 2) - Branched LYS48- and LYS63-Linked Tri-Ubiquitin (K48-K63-UB3) in Complex with Matured Synthetic Nanobody NBSL3.3Q (3RD Generation)
Other atoms:
Cl (1);
Zn (2);
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8a8o (Na: 3) - Paps Reductase From Methanothermococcus Thermolithotrophicus Refined to 1.45 A
Other atoms:
Ca (2);
Fe (16);
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8a9d (Na: 1) - Multicrystal Room Temperature Structure of Lysozyme Collected Using A Double Multilayer Monochromator.
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8a9o (Na: 2) - Structure of the Polyamine Acetyltransferase Dpa
Other atoms:
Mg (2);
Br (18);
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8a9s (Na: 2) - Crystal Structure of CA2+-Discharged Obelin in Complex with Coelenteramine-V
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8ac7 (Na: 9) - Structure of Pseudomonas Aeruginosa Aminopeptidase, Paap
Other atoms:
Zn (8);
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8ack (Na: 9) - Structure of Pseudomonas Aeruginosa Aminopeptidase, Paap
Other atoms:
As (2);
Zn (10);
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8acr (Na: 1) - Structure of Pseudomonas Aeruginosa Aminopeptidase, Paap
Other atoms:
Zn (3);
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8acy (Na: 1) - X-Ray Structure of Na+-Nqr From Vibrio Cholerae at 3.5 A Resolution
Other atoms:
Fe (4);
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8ad0 (Na: 1) - X-Ray Structure of Na+-Nqr From Vibrio Cholerae in Different Conformation at 3.1 A
Other atoms:
Br (1);
Fe (4);
K (1);
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8ad4 (Na: 4) - X-Ray Structure of Nqrf(129-408)of Vibrio Cholerae in Complex with Nadh
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8ad5 (Na: 2) - X-Ray Structure of Nqrf(129-408)of Vibrio Cholerae Variant F406A
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8aeb (Na: 4) - Sars-Cov-2 Main Protease Complexed with N-(Pyridin-3-Ylmethyl) Thioformamide
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8afu (Na: 2) - Daargc - N-Acetyl-Gamma-Glutamyl-Phosphate Reductase of Denitrovibrio Acetiphilus
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8afv (Na: 4) - DAARGC3 - Engineered Formyl Phosphate Reductase with 3 Substitutions (S178V, G182V, L233I)
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8agq (Na: 5) - Crystal Structure of Anthocyanin-Related GSTF8 From Populus Trichocarpa in Complex with (-)-Catechin and Glutathione
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8aho (Na: 2) - Crystal Structure of the Transpeptidase LDTMT2 From Mycobacterium Tuberculosis in Complex with Cyanamide Analogue 31
Other atoms:
Cl (1);
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8ahq (Na: 1) - Vird/Holo-ACP5B of Streptomyces Virginiae Complex
Other atoms:
Cl (2);
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8ahy (Na: 1) - X-Ray Structure of Human Ncs-1 Bound to Ric-8A
Other atoms:
Mg (1);
Ca (2);
Cl (1);
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8ai7 (Na: 1) - Structure of Carbamoylated Human Butyrylcholinesterase Upon Reaction with 3-(((2-Cycloheptylethyl)(Methyl)Amino)Methyl)-1H-Indol-7-Yl N,N- Dimethylcarbamate
Other atoms:
Cl (7);
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8aj3 (Na: 1) - X-Ray Structure of Lysozyme Obtained Upon Reaction with [Vivo(Malt)2] (Structure A)
Other atoms:
V (3);
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8alh (Na: 1) - X-Ray Structure of Human Ncs-1 Bound to Ric-8A
Other atoms:
Ca (2);
Mg (1);
Cl (1);
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8alm (Na: 1) - X-Ray Structure of Human Ncs-1 Bound to Ric-8A
Other atoms:
Ca (2);
Cl (1);
Page generated: Sat Aug 23 06:31:42 2025
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