Sodium in PDB, part 260 (files: 10361-10400),
PDB 7qdq-7rc3
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 10361-10400 (PDB 7qdq-7rc3).
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7qdq (Na: 2) - Crystal Structure of HDM2 in Complex with Caylin-1
Other atoms:
Cl (11);
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7qf0 (Na: 1) - Crystal Structure of the Sars-Cov-2 Rbd in Complex with the Human Antibody CV2.2325
Other atoms:
Cl (3);
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7qf7 (Na: 1) - Orthorhombic Crystal Structure of Ptg CBM21 in Complex with Beta- Cyclodextrin
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7qh0 (Na: 1) - Apo Structure of the Leishmania Mexicana Triose-Phosphate Isomerase (Lmtim), N11A-E65Q Variant, Open Conformation
Other atoms:
Cl (2);
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7qha (Na: 2) - Cryo-Em Structure of the Tripartite Atp-Independent Periplasmic (Trap) Transporter Siaqm From Photobacterium Profundum in Amphipol
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7qhp (Na: 2) - Structure of I-AG7 with A Bound Hybrid Insulin Peptide
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7qkb (Na: 4) - Crystal Structure of Human Cathepsin L in Complex with Covalently Bound GC376
Other atoms:
Cl (1);
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7qlh (Na: 1) - Crystal Structure of S-Layer Protein Slpa From Lactobacillus Amylovorus, Domain I (Aa 48-213)
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7qny (Na: 1) - The Receptor Binding Domain of Sars-Cov-2 Spike Glycoprotein in Complex with Covox-58 and Covox-158 Fabs
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7qoa (Na: 2) - Structure of Codb, A Cytosine Transporter in An Outward-Facing Conformation
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7qq1 (Na: 1) - X-Ray Structure of the Adduct Obtained Upon Reaction of [Cis- RH2(OCOCH3)2(OCOCF3)2] with Hewl
Other atoms:
Rh (3);
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7qta (Na: 1) - S1 Nuclease From Aspergillus Oryzae in Complex with Uridine
Other atoms:
Zn (6);
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7qtd (Na: 2) - Crystal Structure of the Fe(II)/Alpha-Ketoglutarate Dependent Dioxygenase PLAO1 in Complex with Iron and Alpha-Ketoglutarate
Other atoms:
Fe (4);
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7qte (Na: 3) - Crystal Structure of the Fe(II)/Alpha-Ketoglutarate Dependent Dioxygenase PLAO1 in Complex with Cobalt and Succinate
Other atoms:
Co (3);
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7qtf (Na: 4) - Crystal Structure of the Fe(II)/Alpha-Ketoglutarate Dependent Dioxygenase PLAO1 in Complex with Sodium Succinate
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7qua (Na: 2) - Duplex Rna Containing Xanthosine-Cytosine Base Pairs
Other atoms:
Mg (2);
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7quv (Na: 1) - Crystal Structure of Human Calprotectin (S100A8/S100A9) in Complex with Peptide 3
Other atoms:
Ni (1);
K (1);
Ca (3);
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7qxy (Na: 4) - X-Ray Structure of Furin in Complex with the Dichlorophenylpyridine- Based Inhibitor 3
Other atoms:
Cl (3);
Ca (3);
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7qxz (Na: 2) - X-Ray Structure of Furin in Complex with the Dichlorophenylpyridine- Based Inhibitor 5
Other atoms:
Ca (3);
Cl (3);
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7qy0 (Na: 4) - X-Ray Structure of Furin in Complex with the Dichlorophenylpyridine- Based Inhibitor 1
Other atoms:
Cl (3);
Ca (3);
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7qy1 (Na: 4) - X-Ray Structure of Furin in Complex with the Dichlorophenylpyridine- Based Inhibitor 4
Other atoms:
Cl (3);
Ca (3);
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7qy2 (Na: 4) - X-Ray Structure of Furin in Complex with the Dichlorophenylpyridine- Based Inhibitor 2
Other atoms:
Ca (3);
Cl (3);
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7qz1 (Na: 4) - Formate Dehydrogenase From Starkeya Novella
Other atoms:
Cl (2);
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7qzq (Na: 1) - Crystal Structure of the Kelch Domain of Human KBTBD12
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7r3s (Na: 2) - Ftra/P19 of Rubrivivax Gelatinosus in Complex with Ni
Other atoms:
Ni (1);
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7r4u (Na: 5) - Apoform of Ftra/P19 From Rubrivivax Gelatinosus
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7r5o (Na: 24) - 1.58 A Structure of Human Apoferritin Obtained From Titan Krios 2 at Ebic, Dls Under Commissioning Session CM26464-2
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7r63 (Na: 4) - NB82, A Nanobody Against Voltage Gated Sodium Channels NAV1.4 and NAV1.5
Other atoms:
Cl (1);
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7r6t (Na: 1) - Human Exog Complexed with Drp-Containing Dna
Other atoms:
Mg (4);
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7r8p (Na: 1) - Open Form of SAOUHSC_02373 in Complex with Adp, MG2+ and Na+
Other atoms:
Cl (1);
Mg (1);
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7r8q (Na: 6) - Closed Form of SAOUHSC_02373 in Complex with Adp, Citrate, MG2+ and Na+
Other atoms:
Mg (2);
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7r9x (Na: 12) - Crystal Structure of A Dehydrating Condensation Domain, Ambe-Cmodaa, Involved in Nonribosomal Peptide Synthesis
Other atoms:
I (5);
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7rad (Na: 2) - Crystal Structure Analysis of ALDH1B1
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7rax (Na: 1) - Atp-Binding State of the Nucleotide-Binding Domain of HSP70 Dnak Mutant T199A
Other atoms:
K (1);
Mg (1);
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7rbe (Na: 4) - Human Dna Polymerase Beta Crosslinked Binary Complex - A
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7rbf (Na: 2) - Human Dna Polymerase Beta Crosslinked Binary Complex - B
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7rbg (Na: 2) - Human Dna Polymerase Beta Crosslinked Ternary Complex 1
Other atoms:
Ca (3);
Cl (2);
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7rc0 (Na: 1) - X-Ray Structure of Sars-Cov-2 Main Protease Covalently Modified By Compound Grl-091-20
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7rc2 (Na: 1) - Aeronamide N-Methyltransferase, Aere
Other atoms:
Ca (1);
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7rc3 (Na: 2) - Aeronamide N-Methyltransferase, Aere (Y137F)
Other atoms:
Ca (1);
Page generated: Mon Dec 15 11:17:06 2025
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