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Sodium in PDB 9pl2: Crystal Structure of A Snoal-Like Domain-Containing Protein From Mycobacterium Ulcerans

Protein crystallography data

The structure of Crystal Structure of A Snoal-Like Domain-Containing Protein From Mycobacterium Ulcerans, PDB code: 9pl2 was solved by Seattle Structural Genomics Center For Infectious Disease, Seattlestructural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.29 / 1.37
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 57.632, 131.167, 33.32, 90, 90, 90
R / Rfree (%) 15.2 / 19

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of A Snoal-Like Domain-Containing Protein From Mycobacterium Ulcerans (pdb code 9pl2). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of A Snoal-Like Domain-Containing Protein From Mycobacterium Ulcerans, PDB code: 9pl2:

Sodium binding site 1 out of 1 in 9pl2

Go back to Sodium Binding Sites List in 9pl2
Sodium binding site 1 out of 1 in the Crystal Structure of A Snoal-Like Domain-Containing Protein From Mycobacterium Ulcerans


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Snoal-Like Domain-Containing Protein From Mycobacterium Ulcerans within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na202

b:73.8
occ:1.00
CG A:GLU12 2.4 32.6 1.0
OH A:TYR63 2.4 27.2 1.0
OE2 A:GLU12 2.4 38.1 1.0
CD A:GLU12 2.7 37.4 1.0
CG A:ARG8 2.8 21.2 0.7
O A:HOH371 3.1 43.0 1.0
O A:ARG8 3.2 16.2 1.0
CZ A:TYR63 3.2 22.2 1.0
CE2 A:TYR63 3.3 21.7 1.0
CD A:ARG8 3.7 21.7 0.7
CB A:ARG8 3.8 17.5 0.3
CB A:GLU12 3.9 23.0 1.0
C A:ARG8 3.9 16.0 1.0
OE1 A:GLU12 3.9 39.3 1.0
CB A:ARG8 3.9 20.5 0.7
CA A:ARG8 4.0 16.1 0.3
CA A:ARG8 4.0 16.4 0.7
CD A:ARG8 4.1 25.8 0.3
N A:GLU12 4.3 17.2 1.0
CE1 A:TYR63 4.4 22.5 1.0
CG A:ARG8 4.5 17.5 0.3
CA A:GLU12 4.6 18.8 1.0
CD2 A:TYR63 4.6 21.3 1.0
NH1 A:ARG8 4.6 23.6 0.7
CB A:PHE11 4.7 15.2 1.0
NE A:ARG8 4.9 23.4 0.7
N A:GLU9 5.0 16.9 1.0

Reference:

A.R.Ung, S.Lovell, L.Liu, G.W.Buchko, K.P.Battaile. Crystal Structure of A Snoal-Like Domain-Containing Protein From Mycobacterium Ulcerans To Be Published.
Page generated: Mon Aug 18 17:32:56 2025

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