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Sodium in PDB 9ngi: ELIC5 with Propylamine Facing Ecd Inwards in Liposomes with 2:1:1 Popc:Pope:Popg

Sodium Binding Sites:

The binding sites of Sodium atom in the ELIC5 with Propylamine Facing Ecd Inwards in Liposomes with 2:1:1 Popc:Pope:Popg (pdb code 9ngi). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 9 binding sites of Sodium where determined in the ELIC5 with Propylamine Facing Ecd Inwards in Liposomes with 2:1:1 Popc:Pope:Popg, PDB code: 9ngi:
Jump to Sodium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Sodium binding site 1 out of 9 in 9ngi

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Sodium binding site 1 out of 9 in the ELIC5 with Propylamine Facing Ecd Inwards in Liposomes with 2:1:1 Popc:Pope:Popg


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of ELIC5 with Propylamine Facing Ecd Inwards in Liposomes with 2:1:1 Popc:Pope:Popg within 5.0Å range:

Sodium binding site 2 out of 9 in 9ngi

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Sodium binding site 2 out of 9 in the ELIC5 with Propylamine Facing Ecd Inwards in Liposomes with 2:1:1 Popc:Pope:Popg


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of ELIC5 with Propylamine Facing Ecd Inwards in Liposomes with 2:1:1 Popc:Pope:Popg within 5.0Å range:

Sodium binding site 3 out of 9 in 9ngi

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Sodium binding site 3 out of 9 in the ELIC5 with Propylamine Facing Ecd Inwards in Liposomes with 2:1:1 Popc:Pope:Popg


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of ELIC5 with Propylamine Facing Ecd Inwards in Liposomes with 2:1:1 Popc:Pope:Popg within 5.0Å range:

Sodium binding site 4 out of 9 in 9ngi

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Sodium binding site 4 out of 9 in the ELIC5 with Propylamine Facing Ecd Inwards in Liposomes with 2:1:1 Popc:Pope:Popg


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 4 of ELIC5 with Propylamine Facing Ecd Inwards in Liposomes with 2:1:1 Popc:Pope:Popg within 5.0Å range:

Sodium binding site 5 out of 9 in 9ngi

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Sodium binding site 5 out of 9 in the ELIC5 with Propylamine Facing Ecd Inwards in Liposomes with 2:1:1 Popc:Pope:Popg


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 5 of ELIC5 with Propylamine Facing Ecd Inwards in Liposomes with 2:1:1 Popc:Pope:Popg within 5.0Å range:

Sodium binding site 6 out of 9 in 9ngi

Go back to Sodium Binding Sites List in 9ngi
Sodium binding site 6 out of 9 in the ELIC5 with Propylamine Facing Ecd Inwards in Liposomes with 2:1:1 Popc:Pope:Popg


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 6 of ELIC5 with Propylamine Facing Ecd Inwards in Liposomes with 2:1:1 Popc:Pope:Popg within 5.0Å range:

Sodium binding site 7 out of 9 in 9ngi

Go back to Sodium Binding Sites List in 9ngi
Sodium binding site 7 out of 9 in the ELIC5 with Propylamine Facing Ecd Inwards in Liposomes with 2:1:1 Popc:Pope:Popg


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 7 of ELIC5 with Propylamine Facing Ecd Inwards in Liposomes with 2:1:1 Popc:Pope:Popg within 5.0Å range:

Sodium binding site 8 out of 9 in 9ngi

Go back to Sodium Binding Sites List in 9ngi
Sodium binding site 8 out of 9 in the ELIC5 with Propylamine Facing Ecd Inwards in Liposomes with 2:1:1 Popc:Pope:Popg


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 8 of ELIC5 with Propylamine Facing Ecd Inwards in Liposomes with 2:1:1 Popc:Pope:Popg within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na409

b:30.0
occ:1.00
 NE2 C:GLN233 4.5 170.1 1.0
NE2 A:GLN233 4.6 170.1 1.0
NE2 E:GLN233 4.6 170.1 1.0
NE2 D:GLN233 4.6 170.1 1.0
NE2 B:GLN233 4.6 170.1 1.0

Sodium binding site 9 out of 9 in 9ngi

Go back to Sodium Binding Sites List in 9ngi
Sodium binding site 9 out of 9 in the ELIC5 with Propylamine Facing Ecd Inwards in Liposomes with 2:1:1 Popc:Pope:Popg


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 9 of ELIC5 with Propylamine Facing Ecd Inwards in Liposomes with 2:1:1 Popc:Pope:Popg within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na410

b:30.0
occ:1.00
 OE1 A:GLN233 3.3 170.1 1.0
OE1 E:GLN233 3.4 170.1 1.0
OE1 B:GLN233 3.6 170.1 1.0
OE1 D:GLN233 3.7 170.1 1.0
OE1 C:GLN233 3.7 170.1 1.0
CD A:GLN233 4.4 170.1 1.0
CD E:GLN233 4.5 170.1 1.0
CD D:GLN233 4.7 170.1 1.0
CD B:GLN233 4.7 170.1 1.0
NE2 E:GLN233 4.7 170.1 1.0
NE2 A:GLN233 4.8 170.1 1.0
CD C:GLN233 4.8 170.1 1.0
NE2 D:GLN233 4.9 170.1 1.0

Reference:

V.Dalal, B.K.Tan, H.Xu, W.W.Cheng. Cryo-Em Structures of A Pentameric Ligand-Gated Ion Channel in Liposomes Elife 2025.
ISSN: ESSN 2050-084X
DOI: 10.7554/ELIFE.106728.2
Page generated: Mon Aug 18 17:29:09 2025

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