Sodium in PDB 9mwy: Crystal Structure of the Dna Binding Domain of FLI1 in Complex with A Dna Containing Four Contiguous Ggaa Sites

The structure of Crystal Structure of the Dna Binding Domain of FLI1 in Complex with A Dna Containing Four Contiguous Ggaa Sites, PDB code: 9mwy was solved by C.Hou, O.V.Tsodikov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.00 / 3.28
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	78.201, 78.201, 318.618, 90, 90, 90
R / Rfree (%)	21.4 / 28.1

The binding sites of Sodium atom in the Crystal Structure of the Dna Binding Domain of FLI1 in Complex with A Dna Containing Four Contiguous Ggaa Sites (pdb code 9mwy). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of the Dna Binding Domain of FLI1 in Complex with A Dna Containing Four Contiguous Ggaa Sites, PDB code: 9mwy:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of the Dna Binding Domain of FLI1 in Complex with A Dna Containing Four Contiguous Ggaa Sites


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Dna Binding Domain of FLI1 in Complex with A Dna Containing Four Contiguous Ggaa Sites within 5.0Å range: probe atom residue distance (Å) B Occ A:Na401 b:18.4 occ:1.00 OD2 A:ASP315 3.4 130.3 1.0 OD1 D:ASP344 3.5 95.1 1.0 OD1 A:ASP315 3.7 133.3 1.0 CG A:ASP315 3.9 130.4 1.0 OP2 G:DG6 4.3 86.7 1.0 OP1 G:DG6 4.3 84.4 1.0 CG D:ASP344 4.5 95.1 1.0 P G:DG6 4.7 83.4 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of the Dna Binding Domain of FLI1 in Complex with A Dna Containing Four Contiguous Ggaa Sites


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of the Dna Binding Domain of FLI1 in Complex with A Dna Containing Four Contiguous Ggaa Sites within 5.0Å range: probe atom residue distance (Å) B Occ C:Na401 b:18.1 occ:1.00 CB C:LYS350 3.9 80.1 1.0 CE1 C:HIS352 4.0 99.2 1.0 O5' G:DA12 4.1 61.3 1.0 CE2 C:TYR343 4.3 69.4 1.0 CD2 C:TYR343 4.3 69.8 1.0 CZ C:TYR343 4.5 70.1 1.0 NE2 C:HIS352 4.6 98.8 1.0 N C:LYS350 4.6 76.2 1.0 CG C:TYR343 4.7 70.4 1.0 OP1 G:DA12 4.8 58.5 1.0 CE1 C:TYR343 4.8 70.1 1.0 C5' G:DA12 4.9 64.0 1.0 CD1 C:TYR343 4.9 70.8 1.0 CA C:LYS350 4.9 80.3 1.0 ND1 C:HIS352 5.0 97.9 1.0 CG C:LYS350 5.0 80.8 1.0

C.Hou, O.V.Tsodikov. Structure and Cooperative Formation of A FLI1 Filament on Contiguous Ggaa Dna Sites To Be Published.