Sodium in PDB 9me8: Co-Crystal Structure of Maltose Binding Protein (Mbp)-Human SENP3 Fusion Protein in Complex with PELP1 Peptide

The structure of Co-Crystal Structure of Maltose Binding Protein (Mbp)-Human SENP3 Fusion Protein in Complex with PELP1 Peptide, PDB code: 9me8 was solved by A.M.Kaminski, J.Gordon, L.C.Pedersen, R.E.Stanley, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.71 / 2.93
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	140.97, 140.97, 119.633, 90, 90, 120
R / Rfree (%)	20.2 / 23.2

The binding sites of Sodium atom in the Co-Crystal Structure of Maltose Binding Protein (Mbp)-Human SENP3 Fusion Protein in Complex with PELP1 Peptide (pdb code 9me8). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Co-Crystal Structure of Maltose Binding Protein (Mbp)-Human SENP3 Fusion Protein in Complex with PELP1 Peptide, PDB code: 9me8:

Sodium binding site 1 out of 1 in the Co-Crystal Structure of Maltose Binding Protein (Mbp)-Human SENP3 Fusion Protein in Complex with PELP1 Peptide


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Co-Crystal Structure of Maltose Binding Protein (Mbp)-Human SENP3 Fusion Protein in Complex with PELP1 Peptide within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1601 b:69.3 occ:1.00 OD2 A:ASP296 3.3 76.4 1.0 OD1 A:ASP296 3.4 77.9 1.0 ND2 A:ASN18 3.5 89.3 1.0 CG A:ASP296 3.7 72.3 1.0 CZ A:TYR17 3.9 60.7 1.0 CE A:LYS297 4.0 74.4 1.0 CE2 A:TYR17 4.1 63.7 1.0 OH A:TYR17 4.1 71.0 1.0 CE1 A:TYR17 4.3 54.5 1.0 O A:LYS15 4.3 68.0 1.0 NZ A:LYS297 4.4 92.4 1.0 CD A:LYS297 4.5 64.6 1.0 CD2 A:TYR17 4.6 61.5 1.0 CG A:ASN18 4.6 74.1 1.0 CG A:LYS297 4.7 60.2 1.0 CD1 A:TYR17 4.8 66.9 1.0 CB A:ASN18 4.8 64.7 1.0 CG A:TYR17 4.9 66.5 1.0 N A:TYR17 4.9 60.0 1.0 N A:ASN18 5.0 66.2 1.0 CA A:GLY16 5.0 61.8 1.0

J.Gordon, A.M.Kaminski, S.R.Bommu, A.Skrajna, R.M.Petrovich, L.C.Pedersen, R.K.Mcginty, A.J.Warren, R.E.Stanley. PELP1 Coordinates the Modular Assembly and Enzymatic Activity of the Rixosome Complex. Sci Adv V. 11 W4603 2025.
ISSN: ESSN 2375-2548
PubMed: 40712028
DOI: 10.1126/SCIADV.ADW4603