Sodium in PDB 9iqd: Apo-Micm,Homologous of Akam, Snoal-Like Protein

The structure of Apo-Micm,Homologous of Akam, Snoal-Like Protein, PDB code: 9iqd was solved by B.Zhang, H.M.Ge, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	59.54 / 1.77
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	64.306, 72.732, 65.403, 90, 112.21, 90
R / Rfree (%)	18.2 / 21.7

The binding sites of Sodium atom in the Apo-Micm,Homologous of Akam, Snoal-Like Protein (pdb code 9iqd). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Apo-Micm,Homologous of Akam, Snoal-Like Protein, PDB code: 9iqd:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Apo-Micm,Homologous of Akam, Snoal-Like Protein


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Apo-Micm,Homologous of Akam, Snoal-Like Protein within 5.0Å range: probe atom residue distance (Å) B Occ C:Na206 b:44.5 occ:1.00 O C:HOH390 2.4 35.9 1.0 O C:HOH392 3.5 37.8 1.0 CB C:ALA91 3.8 22.5 1.0 CA C:GLY67 4.1 21.7 1.0 O C:GLY67 4.5 21.4 1.0 C C:GLY67 4.9 20.9 1.0 CA C:ALA91 5.0 22.7 1.0 O C:HOH371 5.0 30.7 1.0

Sodium binding site 2 out of 2 in the Apo-Micm,Homologous of Akam, Snoal-Like Protein


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Apo-Micm,Homologous of Akam, Snoal-Like Protein within 5.0Å range: probe atom residue distance (Å) B Occ D:Na203 b:35.3 occ:1.00 N D:SER5 3.0 27.2 1.0 O D:HOH353 3.2 34.9 1.0 N D:THR4 3.3 26.4 1.0 CB D:ASP3 3.5 26.4 1.0 CB D:SER5 3.5 29.6 1.0 OG1 D:THR4 3.7 27.5 1.0 CA D:SER5 3.8 26.6 1.0 C D:THR4 3.9 28.6 1.0 CG D:ASP3 4.0 31.1 1.0 C D:ASP3 4.0 28.1 1.0 OD2 D:ASP3 4.0 34.5 1.0 CA D:THR4 4.0 27.9 1.0 CA D:ASP3 4.1 27.9 1.0 CB D:THR4 4.5 27.0 1.0 NH2 D:ARG75 4.5 35.8 1.0 O D:HOH315 4.8 38.8 1.0 OD1 D:ASP3 4.8 30.5 1.0 OG D:SER5 4.9 31.4 1.0 O D:ASP3 4.9 29.8 1.0

C.L.Liu, B.Zhang, H.M.Ge. Tandem Michael Addition and Knoevenagel Condensation Catalyzed By NTF2-Like Enzymes As Iminium Catalysis To Be Published.