Sodium in PDB 9f80: Crystal Structure of RV2242 Regulator C-Terminal Fragment (161-414)

The structure of Crystal Structure of RV2242 Regulator C-Terminal Fragment (161-414), PDB code: 9f80 was solved by V.Megalizzi, A.Tanina, C.Grosse, M.Mirgaux, P.Legrand, G.Dias Mirandela, A.Wohlkonig, P.Bifani, R.Wintjens, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.38 / 2.03
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	63.04, 75.28, 139.52, 90, 90, 90
R / Rfree (%)	19.6 / 25.4

The binding sites of Sodium atom in the Crystal Structure of RV2242 Regulator C-Terminal Fragment (161-414) (pdb code 9f80). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of RV2242 Regulator C-Terminal Fragment (161-414), PDB code: 9f80:

Sodium binding site 1 out of 1 in the Crystal Structure of RV2242 Regulator C-Terminal Fragment (161-414)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of RV2242 Regulator C-Terminal Fragment (161-414) within 5.0Å range: probe atom residue distance (Å) B Occ A:Na502 b:62.9 occ:1.00 OG1 A:THR202 2.6 40.7 1.0 O A:GLY254 2.6 50.2 1.0 O A:VAL252 2.9 43.3 1.0 N A:THR202 3.1 41.4 1.0 N A:GLY254 3.4 48.6 1.0 O A:PRO200 3.4 44.0 1.0 CB A:THR202 3.4 43.4 1.0 C A:ALA201 3.5 42.9 1.0 C A:GLY254 3.5 56.7 1.0 C A:SER253 3.6 38.9 1.0 C A:PRO200 3.6 46.4 1.0 CA A:ALA201 3.7 43.0 1.0 N A:ALA201 3.7 45.1 1.0 C A:VAL252 3.8 46.8 1.0 CA A:THR202 3.8 41.7 1.0 CA A:SER253 3.9 43.9 1.0 CA A:GLY254 4.0 48.5 1.0 CG2 A:THR280 4.1 47.4 1.0 O A:SER253 4.1 42.5 1.0 O A:ALA201 4.2 40.8 1.0 N A:SER253 4.2 43.9 1.0 CB A:PRO200 4.2 46.5 1.0 CG2 A:VAL252 4.4 47.6 1.0 OG1 A:THR280 4.5 40.5 1.0 CA A:PRO200 4.6 54.1 1.0 N A:GLN255 4.7 51.1 1.0 CB A:LEU256 4.7 61.0 1.0 CG2 A:THR202 4.8 43.0 1.0 CB A:THR280 4.9 43.9 1.0 NH1 A:ARG237 4.9 49.6 1.0 CA A:VAL252 5.0 42.1 1.0 C A:THR202 5.0 39.8 1.0

V.Megalizzi, A.Tanina, C.Grosse, M.Mirgaux, P.Legrand, G.Dias Mirandela, A.Wohlkonig, P.Bifani, R.Wintjens. Domain Architecture of the Mycobacterium Tuberculosis Mabr ( RV2242 ), A Member of the Pucr Transcription Factor Family. Heliyon V. 10 40494 2024.
ISSN: ESSN 2405-8440
PubMed: 39641026
DOI: 10.1016/J.HELIYON.2024.E40494