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Sodium in PDB 8tn4: The Crystal Structure of A Human Monoclonal Antibody (Aab), Termed TG10, Used to Study Poly-N-Acetyl-Glucosamine Broadly Expressed in Biofilm-Forming Pathogenclonal Antibody

Protein crystallography data

The structure of The Crystal Structure of A Human Monoclonal Antibody (Aab), Termed TG10, Used to Study Poly-N-Acetyl-Glucosamine Broadly Expressed in Biofilm-Forming Pathogenclonal Antibody, PDB code: 8tn4 was solved by M.Li, A.Wlodawer, S.Temme, J.Gildersleeve, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.17 / 1.40
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 90.254, 90.254, 208.83, 90, 90, 120
R / Rfree (%) 13.5 / 17

Sodium Binding Sites:

The binding sites of Sodium atom in the The Crystal Structure of A Human Monoclonal Antibody (Aab), Termed TG10, Used to Study Poly-N-Acetyl-Glucosamine Broadly Expressed in Biofilm-Forming Pathogenclonal Antibody (pdb code 8tn4). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the The Crystal Structure of A Human Monoclonal Antibody (Aab), Termed TG10, Used to Study Poly-N-Acetyl-Glucosamine Broadly Expressed in Biofilm-Forming Pathogenclonal Antibody, PDB code: 8tn4:

Sodium binding site 1 out of 1 in 8tn4

Go back to Sodium Binding Sites List in 8tn4
Sodium binding site 1 out of 1 in the The Crystal Structure of A Human Monoclonal Antibody (Aab), Termed TG10, Used to Study Poly-N-Acetyl-Glucosamine Broadly Expressed in Biofilm-Forming Pathogenclonal Antibody


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Crystal Structure of A Human Monoclonal Antibody (Aab), Termed TG10, Used to Study Poly-N-Acetyl-Glucosamine Broadly Expressed in Biofilm-Forming Pathogenclonal Antibody within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Na310

b:55.8
occ:1.00
O H:HOH578 2.0 24.4 1.0
O3 H:SO4301 2.0 25.6 0.6
O2 H:SO4301 2.3 19.4 0.6
S H:SO4301 2.5 20.2 0.6
O4 H:SO4301 2.9 24.9 0.6
OE2 H:GLU51 3.1 18.6 1.0
OG H:SER70 3.6 14.2 1.0
CG2 H:VAL68 3.7 13.7 0.5
O1 H:SO4301 3.8 29.3 0.6
CB H:SER70 4.0 12.2 1.0
O H:HOH619 4.1 37.1 1.0
CD H:GLU51 4.3 13.9 1.0
CG1 H:VAL68 4.5 12.3 0.5
N H:SER70 4.6 10.8 1.0
CB H:VAL68 4.6 11.6 0.5
CB H:VAL68 4.8 13.0 0.5
O L:HOH583 4.9 35.0 1.0
CG2 H:VAL68 4.9 9.5 0.5
OE1 H:GLU51 4.9 16.8 1.0
CA H:SER70 4.9 11.5 1.0
O H:HOH550 5.0 43.2 1.0
O H:HOH403 5.0 32.5 1.0

Reference:

S.Temme, M.Li, A.Wlodawer, J.Gildersleeve. An Human Dpnag-Specific Monoclonal Antibody Provides Protection From A Lethal S. Aureus Changenge and Reveals Unique Biofilm Feature To Be Published.
Page generated: Tue Dec 10 21:20:04 2024

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