Sodium in PDB 8t8l: Structure of Domain of Unknown Function 507 (DUF507) in Space Group P3(2)21

The structure of Structure of Domain of Unknown Function 507 (DUF507) in Space Group P3(2)21, PDB code: 8t8l was solved by J.J.Tanner, C.E.Mckay, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	41.55 / 1.90
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	83.096, 83.096, 68.796, 90, 90, 120
R / Rfree (%)	20.5 / 22.5

The binding sites of Sodium atom in the Structure of Domain of Unknown Function 507 (DUF507) in Space Group P3(2)21 (pdb code 8t8l). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of Domain of Unknown Function 507 (DUF507) in Space Group P3(2)21, PDB code: 8t8l:

Sodium binding site 1 out of 1 in the Structure of Domain of Unknown Function 507 (DUF507) in Space Group P3(2)21


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Domain of Unknown Function 507 (DUF507) in Space Group P3(2)21 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na203 b:52.0 occ:1.00 OD1 A:ASN71 2.2 35.9 1.0 O A:HOH318 2.6 46.7 1.0 CG A:ASN71 3.0 35.1 1.0 ND2 A:ASN71 3.2 35.4 1.0 O A:GLU68 3.8 25.1 1.0 CB A:ASN71 4.5 28.3 1.0 O A:ARG69 4.8 24.3 1.0 C A:GLU68 5.0 26.4 1.0 CA A:ASN71 5.0 22.2 1.0

C.E.Mckay, J.Cheng, J.J.Tanner. Crystal Structure of Domain of Unknown Function 507 (DUF507) Reveals A New Protein Fold. Sci Rep V. 13 13496 2023.
ISSN: ESSN 2045-2322
PubMed: 37596303
DOI: 10.1038/S41598-023-40558-Y