Sodium in PDB 8t0y: TRPV1 in Nanodisc Bound with One Lpa in One Monomer

The binding sites of Sodium atom in the TRPV1 in Nanodisc Bound with One Lpa in One Monomer (pdb code 8t0y). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the TRPV1 in Nanodisc Bound with One Lpa in One Monomer, PDB code: 8t0y:

Sodium binding site 1 out of 1 in the TRPV1 in Nanodisc Bound with One Lpa in One Monomer


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of TRPV1 in Nanodisc Bound with One Lpa in One Monomer within 5.0Å range: probe atom residue distance (Å) B Occ A:Na902 b:24.6 occ:1.00 O D:GLY643 2.3 34.2 1.0 O B:GLY643 2.3 32.8 1.0 O C:GLY643 2.4 33.7 1.0 O A:GLY643 2.4 34.0 1.0 C B:GLY643 3.5 32.8 1.0 C D:GLY643 3.5 34.2 1.0 C A:GLY643 3.6 34.0 1.0 C C:GLY643 3.6 33.7 1.0 HA D:MET644 3.7 35.6 1.0 HA3 A:GLY643 3.8 34.0 1.0 HA B:MET644 3.9 34.9 1.0 HA3 C:GLY643 4.0 33.7 1.0 HA3 B:GLY643 4.0 32.8 1.0 HA C:MET644 4.0 36.1 1.0 HA3 D:GLY643 4.2 34.2 1.0 HA A:MET644 4.2 36.2 1.0 CA A:GLY643 4.2 34.0 1.0 HB2 D:MET644 4.3 35.6 1.0 CA C:GLY643 4.3 33.7 1.0 CA B:GLY643 4.3 32.8 1.0 N D:MET644 4.4 35.6 1.0 CA D:MET644 4.4 35.6 1.0 SD B:MET644 4.5 34.9 1.0 CA D:GLY643 4.5 34.2 1.0 N B:MET644 4.5 34.9 1.0 SD A:MET644 4.5 36.2 1.0 N C:MET644 4.6 36.1 1.0 HA2 A:GLY643 4.6 34.0 1.0 HA2 C:GLY643 4.6 33.7 1.0 CA B:MET644 4.6 34.9 1.0 N A:MET644 4.6 36.2 1.0 HA2 B:GLY643 4.7 32.8 1.0 SD C:MET644 4.7 36.1 1.0 CA C:MET644 4.8 36.1 1.0 HG3 D:MET644 4.8 35.6 1.0 CB D:MET644 4.8 35.6 1.0 HA2 D:GLY643 4.8 34.2 1.0 CA A:MET644 4.9 36.2 1.0 HB2 B:MET644 4.9 34.9 1.0 O A:ILE642 5.0 35.2 1.0

W.R.Arnold, M.Mancino, F.R.Moss Iii, A.Frost, D.Julius, Y.Cheng. Structural Basis of TRPV1 Modulation By Endogenous Bioactive Lipids Nat.Struct.Mol.Biol. 2024.
ISSN: ESSN 1545-9985
DOI: 10.1038/S41594-024-01299-2