Sodium in PDB 8sv0: The Crystal Structure of the Classical Binding Interface of Importin Alpha 2 and Nuclear Localisation Signal Sequence in Psittacine Siadenovirus Core Protein VII

The structure of The Crystal Structure of the Classical Binding Interface of Importin Alpha 2 and Nuclear Localisation Signal Sequence in Psittacine Siadenovirus Core Protein VII, PDB code: 8sv0 was solved by A.Athukorala, S.Sarker, J.K.Forwood, C.M.Donnelly, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.67 / 2.20
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	77.217, 88.728, 96.412, 90, 90, 90
R / Rfree (%)	22.9 / 24.2

The binding sites of Sodium atom in the The Crystal Structure of the Classical Binding Interface of Importin Alpha 2 and Nuclear Localisation Signal Sequence in Psittacine Siadenovirus Core Protein VII (pdb code 8sv0). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the The Crystal Structure of the Classical Binding Interface of Importin Alpha 2 and Nuclear Localisation Signal Sequence in Psittacine Siadenovirus Core Protein VII, PDB code: 8sv0:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the The Crystal Structure of the Classical Binding Interface of Importin Alpha 2 and Nuclear Localisation Signal Sequence in Psittacine Siadenovirus Core Protein VII


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Crystal Structure of the Classical Binding Interface of Importin Alpha 2 and Nuclear Localisation Signal Sequence in Psittacine Siadenovirus Core Protein VII within 5.0Å range: probe atom residue distance (Å) B Occ B:Na601 b:76.8 occ:1.00 HG11 B:VAL374 3.3 71.3 1.0 HE22 B:GLN371 3.4 70.5 1.0 HA B:GLN412 3.4 70.6 1.0 HG2 B:GLN412 3.6 79.7 1.0 HB2 B:TYR415 3.6 73.7 1.0 OE1 B:GLN371 3.7 66.8 1.0 HG3 B:GLN412 3.8 79.7 1.0 NE2 B:GLN371 4.1 58.7 1.0 O B:GLU411 4.1 66.4 1.0 CG B:GLN412 4.1 66.4 1.0 CG1 B:VAL374 4.1 59.4 1.0 HB3 B:TYR415 4.2 73.7 1.0 HG21 B:VAL374 4.2 77.7 1.0 HB3 B:GLU411 4.2 68.5 1.0 CA B:GLN412 4.2 58.8 1.0 HG12 B:VAL374 4.3 71.3 1.0 CB B:TYR415 4.3 61.4 1.0 CD B:GLN371 4.3 59.1 1.0 C B:GLU411 4.3 61.6 1.0 N B:GLN412 4.4 63.2 1.0 HB2 B:GLU411 4.4 68.5 1.0 CG B:TYR415 4.6 59.3 1.0 HG13 B:VAL374 4.7 71.3 1.0 CB B:GLU411 4.7 57.1 1.0 CB B:GLN412 4.8 65.7 1.0 HD2 B:TYR415 4.8 63.2 1.0 HE21 B:GLN412 4.8 65.7 1.0 H B:GLN412 4.9 75.9 1.0 HE21 B:GLN371 4.9 70.5 1.0 CD2 B:TYR415 4.9 52.7 1.0 HB B:VAL374 4.9 75.8 1.0 CG2 B:VAL374 5.0 64.7 1.0 CB B:VAL374 5.0 63.1 1.0

Sodium binding site 2 out of 2 in the The Crystal Structure of the Classical Binding Interface of Importin Alpha 2 and Nuclear Localisation Signal Sequence in Psittacine Siadenovirus Core Protein VII


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of The Crystal Structure of the Classical Binding Interface of Importin Alpha 2 and Nuclear Localisation Signal Sequence in Psittacine Siadenovirus Core Protein VII within 5.0Å range: probe atom residue distance (Å) B Occ B:Na602 b:88.8 occ:1.00 HB2 B:GLU456 3.4 139.7 1.0 HG21 B:VAL417 3.6 94.0 1.0 HG12 B:VAL414 3.7 92.4 1.0 OE1 B:GLU456 3.7 130.7 1.0 HB3 B:GLU456 3.8 139.7 1.0 CB B:GLU456 4.1 116.4 1.0 HB2 B:LEU460 4.1 107.8 1.0 HB2 B:ALA451 4.2 111.0 1.0 HD12 B:LEU454 4.3 121.2 1.0 HA B:ALA451 4.3 123.6 1.0 CD B:GLU456 4.4 126.6 1.0 CG2 B:VAL417 4.5 78.3 1.0 HB1 B:ALA451 4.5 111.0 1.0 HE3 B:LYS459 4.5 158.5 1.0 O B:GLU456 4.6 107.4 1.0 CG1 B:VAL414 4.6 77.0 1.0 HB2 B:LYS459 4.7 124.3 1.0 CB B:ALA451 4.8 92.5 1.0 HD13 B:LEU460 4.8 111.9 1.0 HG22 B:VAL417 4.8 94.0 1.0 HB B:VAL414 4.8 89.9 1.0 CG B:GLU456 4.8 115.3 1.0 HG23 B:VAL417 4.8 94.0 1.0 HE1 B:HIS418 4.8 96.6 1.0 HG11 B:VAL414 4.9 92.4 1.0 HG11 B:VAL417 4.9 83.6 1.0 HA B:VAL414 4.9 95.8 1.0

A.Athukorala, S.Sarker, J.K.Forwood, C.M.Donnelly. Structural and Functional Characterization of Nuclear Localization Signal of Pvii Protein of Psittacine Siadenovirus F Demonstrates An Independent Transport of Pvii Protein Into the Nucleus To Be Published.