Sodium in PDB 8q6k: Human Igd Fab in Complex with An Orthosteric Inhibitor of Phl P 7

The structure of Human Igd Fab in Complex with An Orthosteric Inhibitor of Phl P 7, PDB code: 8q6k was solved by A.M.Davies, S.K.Vester, J.M.Mcdonnell, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.75 / 2.10
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	65.74, 71.041, 122.173, 90, 90, 90
R / Rfree (%)	21.4 / 25.9

The binding sites of Sodium atom in the Human Igd Fab in Complex with An Orthosteric Inhibitor of Phl P 7 (pdb code 8q6k). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Human Igd Fab in Complex with An Orthosteric Inhibitor of Phl P 7, PDB code: 8q6k:

Sodium binding site 1 out of 1 in the Human Igd Fab in Complex with An Orthosteric Inhibitor of Phl P 7


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Human Igd Fab in Complex with An Orthosteric Inhibitor of Phl P 7 within 5.0Å range: probe atom residue distance (Å) B Occ H:Na311 b:63.1 occ:1.00 CE2 H:TYR164 4.0 54.6 1.0 CD2 H:TYR164 4.1 49.3 1.0 CZ H:TYR164 4.1 54.1 1.0 CG H:TYR164 4.3 52.0 1.0 CE1 H:TYR164 4.3 54.1 1.0 CD1 H:TYR164 4.4 57.3 1.0 OH H:TYR164 4.7 61.6 1.0 OE2 H:GLU217 4.8 73.9 1.0

S.K.Vester, A.M.Davies, R.L.Beavil, B.S.Sandhar, A.J.Beavil, H.J.Gould, B.J.Sutton, J.M.Mcdonnell. Expanding the Anti-Phl P 7 Antibody Toolkit: An Anti-Idiotype Nanobody Inhibitor. Antibodies V. 12 2023.
ISSN: ISSN 2073-4468
PubMed: 37987253
DOI: 10.3390/ANTIB12040075