Sodium in PDB 8pum: THA1 L-Threonine Aldolase (Mouse), Monoclinic Form (C2)

The structure of THA1 L-Threonine Aldolase (Mouse), Monoclinic Form (C2), PDB code: 8pum was solved by R.Battistutta, E.Fornasier, G.Giachin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.07 / 2.60
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	83.975, 101.639, 95.958, 90, 116.14, 90
R / Rfree (%)	23.4 / 25.9

The binding sites of Sodium atom in the THA1 L-Threonine Aldolase (Mouse), Monoclinic Form (C2) (pdb code 8pum). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the THA1 L-Threonine Aldolase (Mouse), Monoclinic Form (C2), PDB code: 8pum:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the THA1 L-Threonine Aldolase (Mouse), Monoclinic Form (C2)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of THA1 L-Threonine Aldolase (Mouse), Monoclinic Form (C2) within 5.0Å range: probe atom residue distance (Å) B Occ A:Na501 b:63.5 occ:1.00 OE1 B:GLN275 2.4 69.1 1.0 O A:THR49 2.6 71.9 1.0 OG1 A:THR49 2.6 68.5 1.0 O A:SER241 2.7 64.2 1.0 O A:THR47 2.8 64.1 1.0 O A:ALA246 2.9 63.1 1.0 O A:HOH602 3.1 83.9 1.0 CD B:GLN275 3.4 70.6 1.0 C A:THR49 3.6 72.8 1.0 C A:SER241 3.7 64.9 1.0 CB A:THR49 3.8 67.1 1.0 N A:THR49 3.8 66.5 1.0 C A:THR47 3.8 68.5 1.0 CA A:THR49 3.9 68.0 1.0 C A:ALA246 4.0 65.0 1.0 NE2 B:GLN275 4.0 70.4 1.0 CA A:SER241 4.1 66.7 1.0 O A:PRO247 4.3 64.1 1.0 CB A:SER241 4.3 62.9 1.0 C A:VAL48 4.5 66.3 1.0 O A:GLY245 4.5 66.1 1.0 CA A:PRO247 4.5 68.3 1.0 CA A:THR47 4.5 69.8 1.0 C A:GLY245 4.5 65.5 1.0 CG B:GLN275 4.6 73.1 1.0 O A:LLP242 4.6 70.8 1.0 CB B:ARG274 4.7 71.3 1.0 N A:VAL48 4.7 67.2 1.0 C A:PRO247 4.7 63.9 1.0 N A:PRO247 4.7 68.0 1.0 N A:ALA246 4.7 66.9 1.0 N A:ARG50 4.8 75.3 1.0 N A:LLP242 4.8 71.4 1.0 CB B:GLN275 4.8 73.9 1.0 CA A:VAL48 5.0 65.6 1.0 O A:ASP46 5.0 62.4 1.0 CG2 A:THR49 5.0 68.1 1.0 CG B:ARG274 5.0 70.6 1.0

Sodium binding site 2 out of 2 in the THA1 L-Threonine Aldolase (Mouse), Monoclinic Form (C2)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of THA1 L-Threonine Aldolase (Mouse), Monoclinic Form (C2) within 5.0Å range: probe atom residue distance (Å) B Occ B:Na501 b:67.0 occ:1.00 O B:SER241 2.4 64.4 1.0 OE1 A:GLN275 2.5 69.7 1.0 OG1 B:THR49 2.6 70.5 1.0 O B:THR47 2.8 67.1 1.0 O B:ALA246 2.8 65.1 1.0 O B:THR49 2.9 72.5 1.0 C B:SER241 3.4 66.0 1.0 CD A:GLN275 3.5 72.7 1.0 C B:THR47 3.7 68.5 1.0 CB B:THR49 3.8 69.0 1.0 CA B:SER241 3.8 68.3 1.0 N B:THR49 3.8 68.3 1.0 C B:THR49 3.8 72.5 1.0 C B:ALA246 3.9 69.8 1.0 NE2 A:GLN275 4.0 72.7 1.0 CA B:THR49 4.0 69.5 1.0 CB B:SER241 4.1 64.0 1.0 O B:PRO247 4.3 75.6 1.0 CA B:THR47 4.3 70.7 1.0 O B:GLY245 4.4 70.0 1.0 O B:LLP242 4.4 68.9 1.0 CA B:PRO247 4.4 73.4 1.0 C B:GLY245 4.4 72.2 1.0 N B:LLP242 4.5 67.9 1.0 C B:VAL48 4.6 68.9 1.0 N B:PRO247 4.6 76.6 1.0 N B:ALA246 4.6 71.3 1.0 N B:VAL48 4.7 66.6 1.0 C B:PRO247 4.7 74.8 1.0 CG A:GLN275 4.7 77.6 1.0 O B:ASP46 4.7 67.0 1.0 CB A:ARG274 4.8 72.0 1.0 CA B:GLY245 4.9 70.2 1.0 CG2 B:THR49 4.9 68.7 1.0 CA B:ALA246 4.9 71.3 1.0 CA B:LLP242 5.0 68.1 1.0 CG A:ARG274 5.0 70.0 1.0 CA B:VAL48 5.0 67.8 1.0

R.Battistutta, E.Fornasier, G.Giachin. THA1 L-Threonine Aldolase (Mouse), Monoclinic Form (C2) To Be Published.