Sodium in PDB 8pof: The Crystal Structure of RSSYMEG1 Reveals A Unique Form of Smaller GH7 Endoglucanases Alongside GH7 Cellobiohydrolases in Protist Symbionts of Termites

The structure of The Crystal Structure of RSSYMEG1 Reveals A Unique Form of Smaller GH7 Endoglucanases Alongside GH7 Cellobiohydrolases in Protist Symbionts of Termites, PDB code: 8pof was solved by T.Haataja, M.Sandgren, H.Hansson, J.Stahlberg, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.80 / 1.85
Space group	I 41
Cell size a, b, c (Å), α, β, γ (°)	114.604, 114.604, 49.963, 90, 90, 90
R / Rfree (%)	16.6 / 18.7

The binding sites of Sodium atom in the The Crystal Structure of RSSYMEG1 Reveals A Unique Form of Smaller GH7 Endoglucanases Alongside GH7 Cellobiohydrolases in Protist Symbionts of Termites (pdb code 8pof). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the The Crystal Structure of RSSYMEG1 Reveals A Unique Form of Smaller GH7 Endoglucanases Alongside GH7 Cellobiohydrolases in Protist Symbionts of Termites, PDB code: 8pof:

Sodium binding site 1 out of 1 in the The Crystal Structure of RSSYMEG1 Reveals A Unique Form of Smaller GH7 Endoglucanases Alongside GH7 Cellobiohydrolases in Protist Symbionts of Termites


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Crystal Structure of RSSYMEG1 Reveals A Unique Form of Smaller GH7 Endoglucanases Alongside GH7 Cellobiohydrolases in Protist Symbionts of Termites within 5.0Å range: probe atom residue distance (Å) B Occ A:Na402 b:27.8 occ:1.00 O A:HOH563 2.2 30.5 1.0 O A:HOH612 2.3 23.6 1.0 O A:GLY288 2.4 17.7 1.0 O A:GLY285 2.5 22.1 1.0 HA A:PRO289 3.0 18.0 1.0 HH A:TYR176 3.2 20.4 0.0 H A:GLY285 3.3 20.4 1.0 C A:GLY288 3.5 17.8 1.0 C A:GLY285 3.5 22.2 1.0 N A:GLY285 3.5 20.4 1.0 HA2 A:GLY285 3.6 21.7 1.0 CA A:GLY285 3.8 21.7 1.0 CA A:PRO289 3.8 18.0 1.0 OH A:TYR176 3.8 20.4 1.0 HE1 A:TYR176 3.9 20.4 1.0 H A:GLY288 3.9 18.2 1.0 HA A:SER284 4.0 19.1 1.0 N A:PRO289 4.1 17.8 1.0 C A:PRO289 4.2 18.4 1.0 C A:SER284 4.2 19.6 1.0 CE1 A:TYR176 4.4 20.4 1.0 CZ A:TYR176 4.5 20.0 1.0 O A:PRO289 4.5 17.8 1.0 O A:HOH690 4.6 31.0 1.0 O A:CYS290 4.6 20.1 1.0 H A:CYS290 4.6 19.0 1.0 CA A:SER284 4.7 19.1 1.0 N A:CYS290 4.7 19.0 1.0 N A:GLY288 4.7 18.2 1.0 CA A:GLY288 4.7 18.1 1.0 N A:ASN286 4.7 22.2 1.0 HA3 A:GLY285 4.8 21.7 1.0 HA A:ASN286 4.9 24.4 1.0 O A:HOH693 4.9 22.7 1.0 O A:SER284 5.0 18.8 1.0

T.Haataja, H.Hansson, S.Moriya, M.Sandgren, J.Stahlberg. The Crystal Structure of RSSYMEG1 Reveals A Unique Form of Smaller GH7 Endoglucanases Alongside GH7 Cellobiohydrolases in Protist Symbionts of Termites. Febs J. 2023.
ISSN: ISSN 1742-464X
PubMed: 38073120
DOI: 10.1111/FEBS.17029