Sodium in PDB 8oy0: Atp Phosphoribosyltransferase (Hiszg Atpprt) From Acinetobacter Baumanii

The structure of Atp Phosphoribosyltransferase (Hiszg Atpprt) From Acinetobacter Baumanii, PDB code: 8oy0 was solved by M.S.Alphey, B.Read, R.G.Da Silva, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.82 / 2.40
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	80.271, 172.821, 98.109, 90, 90.97, 90
R / Rfree (%)	23.8 / 26.4

The binding sites of Sodium atom in the Atp Phosphoribosyltransferase (Hiszg Atpprt) From Acinetobacter Baumanii (pdb code 8oy0). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 4 binding sites of Sodium where determined in the Atp Phosphoribosyltransferase (Hiszg Atpprt) From Acinetobacter Baumanii, PDB code: 8oy0:
Jump to Sodium binding site number: 1; 2; 3; 4;

Sodium binding site 1 out of 4 in the Atp Phosphoribosyltransferase (Hiszg Atpprt) From Acinetobacter Baumanii


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Atp Phosphoribosyltransferase (Hiszg Atpprt) From Acinetobacter Baumanii within 5.0Å range: probe atom residue distance (Å) B Occ A:Na402 b:42.6 occ:1.00 OG1 A:THR88 2.4 34.0 1.0 OE2 A:GLU133 2.6 34.3 1.0 OH A:TYR109 2.9 33.8 1.0 OH A:TYR300 3.1 33.8 1.0 O A:PHE316 3.5 34.4 1.0 CB A:THR88 3.5 33.9 1.0 CD A:GLU133 3.7 34.7 1.0 CG2 A:THR88 3.7 34.6 1.0 C A:PHE316 3.7 35.3 1.0 N A:PHE316 4.0 35.6 1.0 OE1 A:GLU133 4.1 35.3 1.0 CB A:SER317 4.2 35.0 1.0 CA A:PHE316 4.2 35.6 1.0 CZ A:TYR300 4.3 34.6 1.0 N A:SER317 4.3 35.8 1.0 CA A:THR88 4.3 33.0 1.0 C A:GLY315 4.3 36.2 1.0 OG A:SER317 4.3 34.0 1.0 CZ A:TYR109 4.3 32.9 1.0 CE2 A:TYR300 4.6 34.7 1.0 O A:GLY315 4.6 36.9 1.0 O A:ALA132 4.6 35.0 1.0 CA A:SER317 4.8 35.9 1.0 CA A:GLY315 4.8 36.8 1.0 N A:THR88 4.9 32.6 1.0 OD1 A:ASP86 4.9 30.4 1.0 CG A:GLU133 5.0 34.1 1.0

Sodium binding site 2 out of 4 in the Atp Phosphoribosyltransferase (Hiszg Atpprt) From Acinetobacter Baumanii


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Atp Phosphoribosyltransferase (Hiszg Atpprt) From Acinetobacter Baumanii within 5.0Å range: probe atom residue distance (Å) B Occ B:Na401 b:31.6 occ:1.00 OE2 B:GLU133 2.4 39.8 1.0 OG1 B:THR88 2.6 35.6 1.0 OH B:TYR109 2.8 38.1 1.0 OH B:TYR300 3.0 38.5 1.0 O B:PHE316 3.3 36.6 1.0 CD B:GLU133 3.4 39.3 1.0 C B:PHE316 3.6 36.7 1.0 CB B:THR88 3.7 35.4 1.0 N B:PHE316 3.8 37.4 1.0 CG2 B:THR88 3.8 36.3 1.0 OE1 B:GLU133 3.9 40.2 1.0 C B:GLY315 4.1 37.8 1.0 CA B:PHE316 4.1 37.5 1.0 CZ B:TYR109 4.2 36.4 1.0 CZ B:TYR300 4.2 39.1 1.0 N B:SER317 4.3 36.8 1.0 O B:ALA132 4.3 35.9 1.0 CB B:SER317 4.3 35.9 1.0 CA B:THR88 4.4 34.5 1.0 OG B:SER317 4.5 36.3 1.0 O B:GLY315 4.5 38.2 1.0 CA B:GLY315 4.6 37.8 1.0 CE2 B:TYR300 4.6 39.2 1.0 CG B:GLU133 4.7 37.7 1.0 CA B:SER317 4.8 36.6 1.0 CE2 B:TYR109 4.9 36.4 1.0 N B:THR88 5.0 33.7 1.0

Sodium binding site 3 out of 4 in the Atp Phosphoribosyltransferase (Hiszg Atpprt) From Acinetobacter Baumanii


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Atp Phosphoribosyltransferase (Hiszg Atpprt) From Acinetobacter Baumanii within 5.0Å range: probe atom residue distance (Å) B Occ C:Na401 b:45.2 occ:1.00 OE2 C:GLU133 2.4 40.2 1.0 OG1 C:THR88 2.7 38.9 1.0 OH C:TYR300 2.9 33.2 1.0 OH C:TYR109 3.0 38.4 1.0 O C:PHE316 3.3 37.3 1.0 CD C:GLU133 3.5 39.1 1.0 C C:PHE316 3.5 37.3 1.0 N C:PHE316 3.6 37.9 1.0 OE1 C:GLU133 3.8 40.1 1.0 CB C:THR88 3.9 38.5 1.0 C C:GLY315 3.9 37.6 1.0 CG2 C:THR88 3.9 39.1 1.0 CA C:PHE316 4.0 37.7 1.0 CZ C:TYR300 4.1 33.5 1.0 N C:SER317 4.2 38.2 1.0 O C:ALA132 4.3 35.6 1.0 O C:GLY315 4.3 38.5 1.0 CB C:SER317 4.4 38.2 1.0 CZ C:TYR109 4.4 37.0 1.0 CA C:GLY315 4.4 37.1 1.0 CE2 C:TYR300 4.5 33.6 1.0 OG C:SER317 4.5 38.5 1.0 CA C:THR88 4.5 37.1 1.0 O C:HOH539 4.7 51.8 1.0 CG C:GLU133 4.7 38.0 1.0 CA C:SER317 4.8 38.7 1.0

Sodium binding site 4 out of 4 in the Atp Phosphoribosyltransferase (Hiszg Atpprt) From Acinetobacter Baumanii


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 4 of Atp Phosphoribosyltransferase (Hiszg Atpprt) From Acinetobacter Baumanii within 5.0Å range: probe atom residue distance (Å) B Occ D:Na401 b:37.7 occ:1.00 OE2 D:GLU133 2.4 39.4 1.0 OG1 D:THR88 2.5 39.2 1.0 OH D:TYR109 2.8 38.7 1.0 OH D:TYR300 3.1 37.7 1.0 O D:PHE316 3.4 43.0 1.0 CD D:GLU133 3.4 39.7 1.0 CB D:THR88 3.6 38.8 1.0 C D:PHE316 3.7 42.7 1.0 CG2 D:THR88 3.8 39.4 1.0 OE1 D:GLU133 3.9 39.8 1.0 N D:PHE316 4.0 43.0 1.0 CZ D:TYR109 4.1 37.2 1.0 C D:GLY315 4.2 43.1 1.0 CZ D:TYR300 4.2 38.8 1.0 CA D:PHE316 4.2 43.8 1.0 CA D:THR88 4.3 38.7 1.0 CB D:SER317 4.3 41.7 1.0 N D:SER317 4.3 42.4 1.0 O D:ALA132 4.4 38.0 1.0 OG D:SER317 4.5 41.1 1.0 O D:GLY315 4.6 43.8 1.0 CE2 D:TYR300 4.6 39.2 1.0 CG D:GLU133 4.7 39.1 1.0 CA D:GLY315 4.7 42.6 1.0 N D:THR88 4.9 38.1 1.0 CE2 D:TYR109 4.9 37.6 1.0 CA D:SER317 4.9 42.3 1.0

B.Read, M.S.Alphey, R.G.Da Silva. Atp Phosphoribosyltransferase (Hiszg Atpprt) From Acinetobacter Baumanii To Be Published.