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Sodium in PDB 8ov8: Crystal Structure of Ene-Reductase 1 From Black Poplar Mushroom in Complex to Nadp

Protein crystallography data

The structure of Crystal Structure of Ene-Reductase 1 From Black Poplar Mushroom in Complex to Nadp, PDB code: 8ov8 was solved by L.Korf, L.-O.Essen, D.Karrer, M.Ruehl, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.79 / 1.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 83.42, 99.729, 103.099, 90, 90, 90
R / Rfree (%) 16.9 / 20.7

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Ene-Reductase 1 From Black Poplar Mushroom in Complex to Nadp (pdb code 8ov8). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Ene-Reductase 1 From Black Poplar Mushroom in Complex to Nadp, PDB code: 8ov8:

Sodium binding site 1 out of 1 in 8ov8

Go back to Sodium Binding Sites List in 8ov8
Sodium binding site 1 out of 1 in the Crystal Structure of Ene-Reductase 1 From Black Poplar Mushroom in Complex to Nadp


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Ene-Reductase 1 From Black Poplar Mushroom in Complex to Nadp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na405

b:44.0
occ:0.43
O B:HOH730 2.1 61.6 1.0
O B:HOH633 2.3 47.3 1.0
O B:GLY329 2.4 41.2 1.0
O B:HOH723 2.6 64.0 1.0
O3X B:NAP401 2.9 43.2 1.0
NZ B:LYS209 3.2 54.0 1.0
O B:HOH547 3.4 55.8 1.0
C B:GLY329 3.4 43.1 1.0
O2X B:NAP401 3.6 41.0 1.0
P2B B:NAP401 3.7 41.5 1.0
O B:GLY189 3.7 42.1 1.0
CA B:GLY329 3.8 36.3 1.0
CA B:GLY189 3.8 35.3 1.0
NZ B:LYS193 3.8 44.7 1.0
O B:HOH722 3.9 56.1 1.0
C B:GLY189 3.9 40.8 1.0
H2B B:NAP401 4.1 47.6 1.0
CE B:LYS209 4.2 47.0 1.0
O2B B:NAP401 4.4 34.5 1.0
N B:GLY189 4.5 40.1 1.0
N B:GLU330 4.6 38.6 1.0
CE B:LYS193 4.6 42.1 1.0
N B:SER190 4.7 37.2 1.0
C2B B:NAP401 4.7 39.7 1.0
O B:LYS328 4.8 44.0 1.0
CD B:LYS193 4.8 41.8 1.0
OH B:TYR208 4.9 46.4 1.0
CB B:SER190 4.9 37.8 1.0
CA B:GLU330 5.0 41.2 1.0

Reference:

D.Karrer, E.Wedler, C.Mewe, M.Gand, M.S.Vogt, L.Korf, L.-O.Essen, M.Ruehl. Shifting the Substrate Scope of An Ene/Yne-Reductase By Loop Engineering To Be Published.
Page generated: Wed Oct 9 12:47:47 2024

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