Sodium in PDB 8k1u: Potassium Transporter Ktrab From Bacillus Subtilis in Atp-Bound State with Addition of Edta and Egta
Other elements in 8k1u:
The structure of Potassium Transporter Ktrab From Bacillus Subtilis in Atp-Bound State with Addition of Edta and Egta also contains other interesting chemical elements:
Sodium Binding Sites:
The binding sites of Sodium atom in the Potassium Transporter Ktrab From Bacillus Subtilis in Atp-Bound State with Addition of Edta and Egta
(pdb code 8k1u). This binding sites where shown within
5.0 Angstroms radius around Sodium atom.
In total 4 binding sites of Sodium where determined in the
Potassium Transporter Ktrab From Bacillus Subtilis in Atp-Bound State with Addition of Edta and Egta, PDB code: 8k1u:
Jump to Sodium binding site number:
1;
2;
3;
4;
Sodium binding site 1 out
of 4 in 8k1u
Go back to
Sodium Binding Sites List in 8k1u
Sodium binding site 1 out
of 4 in the Potassium Transporter Ktrab From Bacillus Subtilis in Atp-Bound State with Addition of Edta and Egta
Mono view
Stereo pair view
|
A full contact list of Sodium with other atoms in the Na binding
site number 1 of Potassium Transporter Ktrab From Bacillus Subtilis in Atp-Bound State with Addition of Edta and Egta within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Na302
b:11.0
occ:1.00
|
O3G
|
A:ATP301
|
2.5
|
3.2
|
1.0
|
O3G
|
B:ATP301
|
2.5
|
15.3
|
1.0
|
OE2
|
A:GLU125
|
2.6
|
11.8
|
1.0
|
NH2
|
A:ARG16
|
2.6
|
15.3
|
1.0
|
NH2
|
B:ARG16
|
2.6
|
15.3
|
1.0
|
OE2
|
B:GLU125
|
2.6
|
9.7
|
1.0
|
CZ
|
A:ARG16
|
3.4
|
15.3
|
1.0
|
CZ
|
B:ARG16
|
3.4
|
15.3
|
1.0
|
CD
|
A:GLU125
|
3.5
|
11.8
|
1.0
|
CD
|
B:GLU125
|
3.5
|
9.7
|
1.0
|
CG
|
A:GLU125
|
3.8
|
11.8
|
1.0
|
CG
|
B:GLU125
|
3.9
|
9.7
|
1.0
|
NE
|
A:ARG16
|
3.9
|
15.3
|
1.0
|
PG
|
A:ATP301
|
3.9
|
3.2
|
1.0
|
PG
|
B:ATP301
|
4.0
|
15.3
|
1.0
|
NE
|
B:ARG16
|
4.0
|
15.3
|
1.0
|
NH1
|
A:ARG16
|
4.1
|
15.3
|
1.0
|
NH1
|
B:ARG16
|
4.2
|
15.3
|
1.0
|
O2G
|
A:ATP301
|
4.3
|
3.2
|
1.0
|
O2G
|
B:ATP301
|
4.3
|
15.3
|
1.0
|
O2B
|
B:ATP301
|
4.4
|
15.3
|
1.0
|
O1B
|
A:ATP301
|
4.4
|
3.2
|
1.0
|
O2B
|
A:ATP301
|
4.5
|
3.2
|
1.0
|
O1B
|
B:ATP301
|
4.5
|
15.3
|
1.0
|
OE1
|
B:GLU125
|
4.5
|
9.7
|
1.0
|
OE1
|
A:GLU125
|
4.5
|
11.8
|
1.0
|
O3B
|
A:ATP301
|
4.6
|
3.2
|
1.0
|
O3B
|
B:ATP301
|
4.6
|
15.3
|
1.0
|
PB
|
A:ATP301
|
4.7
|
3.2
|
1.0
|
PB
|
B:ATP301
|
4.7
|
15.3
|
1.0
|
NZ
|
A:LYS103
|
4.7
|
15.3
|
1.0
|
NZ
|
B:LYS103
|
4.8
|
7.4
|
1.0
|
|
Sodium binding site 2 out
of 4 in 8k1u
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Sodium Binding Sites List in 8k1u
Sodium binding site 2 out
of 4 in the Potassium Transporter Ktrab From Bacillus Subtilis in Atp-Bound State with Addition of Edta and Egta
Mono view
Stereo pair view
|
A full contact list of Sodium with other atoms in the Na binding
site number 2 of Potassium Transporter Ktrab From Bacillus Subtilis in Atp-Bound State with Addition of Edta and Egta within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Na301
b:9.9
occ:1.00
|
O3G
|
D:ATP302
|
2.6
|
3.0
|
1.0
|
O3G
|
C:ATP301
|
2.6
|
15.3
|
1.0
|
OE2
|
D:GLU125
|
2.6
|
10.6
|
1.0
|
OE2
|
C:GLU125
|
2.6
|
9.8
|
1.0
|
NH2
|
C:ARG16
|
2.6
|
15.3
|
1.0
|
NH2
|
D:ARG16
|
2.6
|
15.3
|
1.0
|
CZ
|
D:ARG16
|
3.4
|
15.3
|
1.0
|
CZ
|
C:ARG16
|
3.4
|
15.3
|
1.0
|
CD
|
D:GLU125
|
3.5
|
10.6
|
1.0
|
CD
|
C:GLU125
|
3.5
|
9.8
|
1.0
|
CG
|
D:GLU125
|
3.8
|
10.6
|
1.0
|
CG
|
C:GLU125
|
3.9
|
9.8
|
1.0
|
PG
|
D:ATP302
|
3.9
|
3.0
|
1.0
|
NE
|
C:ARG16
|
4.0
|
15.3
|
1.0
|
NE
|
D:ARG16
|
4.0
|
15.3
|
1.0
|
PG
|
C:ATP301
|
4.0
|
15.3
|
1.0
|
NH1
|
D:ARG16
|
4.1
|
15.3
|
1.0
|
NH1
|
C:ARG16
|
4.2
|
15.3
|
1.0
|
O2G
|
D:ATP302
|
4.3
|
3.0
|
1.0
|
O2G
|
C:ATP301
|
4.3
|
15.3
|
1.0
|
O2B
|
C:ATP301
|
4.4
|
15.3
|
1.0
|
O1B
|
C:ATP301
|
4.5
|
15.3
|
1.0
|
O1B
|
D:ATP302
|
4.5
|
3.0
|
1.0
|
O2B
|
D:ATP302
|
4.5
|
3.0
|
1.0
|
OE1
|
D:GLU125
|
4.5
|
10.6
|
1.0
|
OE1
|
C:GLU125
|
4.5
|
9.8
|
1.0
|
O3B
|
D:ATP302
|
4.6
|
3.0
|
1.0
|
O3B
|
C:ATP301
|
4.6
|
15.3
|
1.0
|
PB
|
C:ATP301
|
4.7
|
15.3
|
1.0
|
NZ
|
C:LYS103
|
4.7
|
7.0
|
1.0
|
PB
|
D:ATP302
|
4.7
|
3.0
|
1.0
|
NZ
|
D:LYS103
|
4.7
|
15.3
|
1.0
|
|
Sodium binding site 3 out
of 4 in 8k1u
Go back to
Sodium Binding Sites List in 8k1u
Sodium binding site 3 out
of 4 in the Potassium Transporter Ktrab From Bacillus Subtilis in Atp-Bound State with Addition of Edta and Egta
Mono view
Stereo pair view
|
A full contact list of Sodium with other atoms in the Na binding
site number 3 of Potassium Transporter Ktrab From Bacillus Subtilis in Atp-Bound State with Addition of Edta and Egta within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Na302
b:15.5
occ:1.00
|
O3G
|
F:ATP301
|
2.5
|
10.2
|
1.0
|
O3G
|
E:ATP301
|
2.5
|
15.3
|
1.0
|
OE2
|
E:GLU125
|
2.6
|
5.9
|
1.0
|
OE2
|
F:GLU125
|
2.6
|
9.1
|
1.0
|
NH2
|
F:ARG16
|
2.6
|
12.3
|
1.0
|
NH2
|
E:ARG16
|
2.6
|
15.3
|
1.0
|
CZ
|
F:ARG16
|
3.4
|
12.3
|
1.0
|
CZ
|
E:ARG16
|
3.4
|
15.3
|
1.0
|
CD
|
E:GLU125
|
3.5
|
5.9
|
1.0
|
CD
|
F:GLU125
|
3.5
|
9.1
|
1.0
|
CG
|
E:GLU125
|
3.8
|
5.9
|
1.0
|
CG
|
F:GLU125
|
3.9
|
9.1
|
1.0
|
PG
|
F:ATP301
|
3.9
|
10.2
|
1.0
|
NE
|
F:ARG16
|
4.0
|
12.3
|
1.0
|
PG
|
E:ATP301
|
4.0
|
15.3
|
1.0
|
NE
|
E:ARG16
|
4.0
|
15.3
|
1.0
|
NH1
|
E:ARG16
|
4.1
|
15.3
|
1.0
|
NH1
|
F:ARG16
|
4.2
|
12.3
|
1.0
|
O2G
|
E:ATP301
|
4.3
|
15.3
|
1.0
|
O2G
|
F:ATP301
|
4.4
|
10.2
|
1.0
|
O1B
|
F:ATP301
|
4.4
|
10.2
|
1.0
|
O2B
|
F:ATP301
|
4.4
|
10.2
|
1.0
|
OE1
|
E:GLU125
|
4.5
|
5.9
|
1.0
|
O3B
|
F:ATP301
|
4.5
|
10.2
|
1.0
|
O1B
|
E:ATP301
|
4.5
|
15.3
|
1.0
|
OE1
|
F:GLU125
|
4.5
|
9.1
|
1.0
|
O2B
|
E:ATP301
|
4.6
|
15.3
|
1.0
|
PB
|
F:ATP301
|
4.7
|
10.2
|
1.0
|
O3B
|
E:ATP301
|
4.7
|
15.3
|
1.0
|
NZ
|
F:LYS103
|
4.7
|
8.3
|
1.0
|
NZ
|
E:LYS103
|
4.8
|
18.5
|
1.0
|
PB
|
E:ATP301
|
4.8
|
15.3
|
1.0
|
O1G
|
E:ATP301
|
5.0
|
15.3
|
1.0
|
|
Sodium binding site 4 out
of 4 in 8k1u
Go back to
Sodium Binding Sites List in 8k1u
Sodium binding site 4 out
of 4 in the Potassium Transporter Ktrab From Bacillus Subtilis in Atp-Bound State with Addition of Edta and Egta
Mono view
Stereo pair view
|
A full contact list of Sodium with other atoms in the Na binding
site number 4 of Potassium Transporter Ktrab From Bacillus Subtilis in Atp-Bound State with Addition of Edta and Egta within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Na302
b:10.5
occ:1.00
|
O3G
|
G:ATP301
|
2.5
|
9.8
|
1.0
|
O3G
|
H:ATP301
|
2.5
|
3.4
|
1.0
|
OE2
|
H:GLU125
|
2.6
|
8.7
|
1.0
|
OE2
|
G:GLU125
|
2.6
|
8.7
|
1.0
|
NH2
|
G:ARG16
|
2.6
|
16.4
|
1.0
|
NH2
|
H:ARG16
|
2.6
|
15.3
|
1.0
|
CZ
|
G:ARG16
|
3.4
|
16.4
|
1.0
|
CZ
|
H:ARG16
|
3.4
|
15.3
|
1.0
|
CD
|
H:GLU125
|
3.5
|
8.7
|
1.0
|
CD
|
G:GLU125
|
3.5
|
8.7
|
1.0
|
CG
|
H:GLU125
|
3.8
|
8.7
|
1.0
|
CG
|
G:GLU125
|
3.9
|
8.7
|
1.0
|
PG
|
G:ATP301
|
3.9
|
9.8
|
1.0
|
NE
|
G:ARG16
|
4.0
|
16.4
|
1.0
|
NE
|
H:ARG16
|
4.0
|
15.3
|
1.0
|
PG
|
H:ATP301
|
4.0
|
3.4
|
1.0
|
NH1
|
H:ARG16
|
4.1
|
15.3
|
1.0
|
NH1
|
G:ARG16
|
4.1
|
16.4
|
1.0
|
O2G
|
G:ATP301
|
4.3
|
9.8
|
1.0
|
O2G
|
H:ATP301
|
4.4
|
3.4
|
1.0
|
O1B
|
G:ATP301
|
4.5
|
9.8
|
1.0
|
O3B
|
G:ATP301
|
4.5
|
9.8
|
1.0
|
OE1
|
H:GLU125
|
4.5
|
8.7
|
1.0
|
O2B
|
G:ATP301
|
4.5
|
9.8
|
1.0
|
OE1
|
G:GLU125
|
4.5
|
8.7
|
1.0
|
O1B
|
H:ATP301
|
4.6
|
3.4
|
1.0
|
O2B
|
H:ATP301
|
4.6
|
3.4
|
1.0
|
O3B
|
H:ATP301
|
4.7
|
3.4
|
1.0
|
NZ
|
G:LYS103
|
4.7
|
7.7
|
1.0
|
PB
|
G:ATP301
|
4.7
|
9.8
|
1.0
|
NZ
|
H:LYS103
|
4.8
|
19.4
|
1.0
|
PB
|
H:ATP301
|
4.8
|
3.4
|
1.0
|
O1G
|
H:ATP301
|
5.0
|
3.4
|
1.0
|
|
Reference:
Y.K.Chang,
W.T.Chiang,
N.J.Hu,
M.D.Tsai.
Potassium Transporter Ktrab From Bacillus Subtilis in Atp-Bound State with Addition of Edta and Egta To Be Published.
Page generated: Wed Oct 9 12:43:08 2024
|