Sodium in PDB 8k1t: Potassium Transporter Ktrab From Bacillus Subtilis in Atp-Bound State with Addition of MGCL2

The structure of Potassium Transporter Ktrab From Bacillus Subtilis in Atp-Bound State with Addition of MGCL2 also contains other interesting chemical elements:

Potassium

(K)

4 atoms

The binding sites of Sodium atom in the Potassium Transporter Ktrab From Bacillus Subtilis in Atp-Bound State with Addition of MGCL2 (pdb code 8k1t). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 4 binding sites of Sodium where determined in the Potassium Transporter Ktrab From Bacillus Subtilis in Atp-Bound State with Addition of MGCL2, PDB code: 8k1t:
Jump to Sodium binding site number: 1; 2; 3; 4;

Sodium binding site 1 out of 4 in the Potassium Transporter Ktrab From Bacillus Subtilis in Atp-Bound State with Addition of MGCL2


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Potassium Transporter Ktrab From Bacillus Subtilis in Atp-Bound State with Addition of MGCL2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na302 b:28.8 occ:1.00 OE2 A:GLU125 2.4 30.2 1.0 OE2 B:GLU125 2.4 30.1 1.0 O2G B:ATP301 2.6 41.0 1.0 O2G A:ATP301 2.6 32.4 1.0 NH2 B:ARG16 2.6 27.6 1.0 NH2 A:ARG16 2.6 38.2 1.0 CZ A:ARG16 3.4 38.2 1.0 CZ B:ARG16 3.4 27.6 1.0 CD A:GLU125 3.4 30.2 1.0 CD B:GLU125 3.4 30.1 1.0 CG A:GLU125 3.7 30.2 1.0 CG B:GLU125 3.7 30.1 1.0 NE A:ARG16 3.9 38.2 1.0 NE B:ARG16 3.9 27.6 1.0 PG B:ATP301 4.0 41.0 1.0 PG A:ATP301 4.0 32.4 1.0 NH1 A:ARG16 4.1 38.2 1.0 NH1 B:ARG16 4.2 27.6 1.0 O2B B:ATP301 4.4 41.0 1.0 O1B B:ATP301 4.4 41.0 1.0 O2B A:ATP301 4.4 32.4 1.0 O1B A:ATP301 4.4 32.4 1.0 O1G B:ATP301 4.4 41.0 1.0 O1G A:ATP301 4.4 32.4 1.0 OE1 A:GLU125 4.5 30.2 1.0 OE1 B:GLU125 4.5 30.1 1.0 O3B B:ATP301 4.5 41.0 1.0 O3B A:ATP301 4.6 32.4 1.0 NZ B:LYS103 4.6 26.4 1.0 NZ A:LYS103 4.6 29.4 1.0 PB B:ATP301 4.6 41.0 1.0 PB A:ATP301 4.7 32.4 1.0

Sodium binding site 2 out of 4 in the Potassium Transporter Ktrab From Bacillus Subtilis in Atp-Bound State with Addition of MGCL2


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Potassium Transporter Ktrab From Bacillus Subtilis in Atp-Bound State with Addition of MGCL2 within 5.0Å range: probe atom residue distance (Å) B Occ C:Na302 b:30.7 occ:1.00 OE2 C:GLU125 2.5 31.0 1.0 OE2 D:GLU125 2.5 31.2 1.0 O3G D:ATP301 2.5 24.5 1.0 O3G C:ATP301 2.5 36.5 1.0 NH2 D:ARG16 2.6 38.2 1.0 NH2 C:ARG16 2.6 38.2 1.0 CZ D:ARG16 3.3 38.2 1.0 CZ C:ARG16 3.3 38.2 1.0 CD D:GLU125 3.4 31.2 1.0 CD C:GLU125 3.4 31.0 1.0 CG D:GLU125 3.7 31.2 1.0 CG C:GLU125 3.8 31.0 1.0 NE C:ARG16 3.8 38.2 1.0 NE D:ARG16 3.8 38.2 1.0 PG D:ATP301 3.9 24.5 1.0 PG C:ATP301 4.0 36.5 1.0 NH1 D:ARG16 4.0 38.2 1.0 NH1 C:ARG16 4.0 38.2 1.0 O2G D:ATP301 4.3 24.5 1.0 O1B C:ATP301 4.4 36.5 1.0 O2B C:ATP301 4.4 36.5 1.0 O2G C:ATP301 4.4 36.5 1.0 O2B D:ATP301 4.4 24.5 1.0 NZ C:LYS103 4.5 27.8 1.0 O1B D:ATP301 4.5 24.5 1.0 OE1 C:GLU125 4.5 31.0 1.0 OE1 D:GLU125 4.5 31.2 1.0 O3B C:ATP301 4.6 36.5 1.0 NZ D:LYS103 4.6 26.7 1.0 O3B D:ATP301 4.6 24.5 1.0 PB C:ATP301 4.6 36.5 1.0 PB D:ATP301 4.7 24.5 1.0 O1G D:ATP301 5.0 24.5 1.0 O1G C:ATP301 5.0 36.5 1.0

Sodium binding site 3 out of 4 in the Potassium Transporter Ktrab From Bacillus Subtilis in Atp-Bound State with Addition of MGCL2


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Potassium Transporter Ktrab From Bacillus Subtilis in Atp-Bound State with Addition of MGCL2 within 5.0Å range: probe atom residue distance (Å) B Occ E:Na302 b:30.6 occ:1.00 OE2 F:GLU125 2.5 31.1 1.0 OE2 E:GLU125 2.5 31.1 1.0 O3G E:ATP301 2.5 25.0 1.0 O3G F:ATP301 2.5 34.2 1.0 NH2 E:ARG16 2.6 38.2 1.0 NH2 F:ARG16 2.7 38.2 1.0 CZ F:ARG16 3.3 38.2 1.0 CZ E:ARG16 3.3 38.2 1.0 CD F:GLU125 3.4 31.1 1.0 CD E:GLU125 3.4 31.1 1.0 CG F:GLU125 3.7 31.1 1.0 CG E:GLU125 3.8 31.1 1.0 NE F:ARG16 3.9 38.2 1.0 NE E:ARG16 3.9 38.2 1.0 PG E:ATP301 3.9 25.0 1.0 PG F:ATP301 4.0 34.2 1.0 NH1 F:ARG16 4.0 38.2 1.0 NH1 E:ARG16 4.0 38.2 1.0 O2G E:ATP301 4.3 25.0 1.0 O2B F:ATP301 4.4 34.2 1.0 O1B F:ATP301 4.4 34.2 1.0 O2B E:ATP301 4.4 25.0 1.0 O2G F:ATP301 4.4 34.2 1.0 O1B E:ATP301 4.5 25.0 1.0 OE1 F:GLU125 4.5 31.1 1.0 OE1 E:GLU125 4.5 31.1 1.0 NZ E:LYS103 4.6 28.7 1.0 NZ F:LYS103 4.6 27.9 1.0 O3B F:ATP301 4.6 34.2 1.0 O3B E:ATP301 4.6 25.0 1.0 PB F:ATP301 4.6 34.2 1.0 PB E:ATP301 4.7 25.0 1.0 O1G E:ATP301 5.0 25.0 1.0 O1G F:ATP301 5.0 34.2 1.0

Sodium binding site 4 out of 4 in the Potassium Transporter Ktrab From Bacillus Subtilis in Atp-Bound State with Addition of MGCL2


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 4 of Potassium Transporter Ktrab From Bacillus Subtilis in Atp-Bound State with Addition of MGCL2 within 5.0Å range: probe atom residue distance (Å) B Occ G:Na302 b:27.6 occ:1.00 OE2 G:GLU125 2.4 30.5 1.0 OE2 H:GLU125 2.4 29.8 1.0 O2G G:ATP301 2.6 40.0 1.0 O2G H:ATP301 2.6 32.6 1.0 NH2 G:ARG16 2.6 27.6 1.0 NH2 H:ARG16 2.6 38.2 1.0 CZ G:ARG16 3.3 27.6 1.0 CD G:GLU125 3.4 30.5 1.0 CD H:GLU125 3.4 29.8 1.0 CZ H:ARG16 3.4 38.2 1.0 CG G:GLU125 3.7 30.5 1.0 CG H:GLU125 3.7 29.8 1.0 NE G:ARG16 3.8 27.6 1.0 NE H:ARG16 3.9 38.2 1.0 PG G:ATP301 4.0 40.0 1.0 PG H:ATP301 4.0 32.6 1.0 NH1 G:ARG16 4.1 27.6 1.0 NH1 H:ARG16 4.1 38.2 1.0 O2B H:ATP301 4.4 32.6 1.0 O1B H:ATP301 4.4 32.6 1.0 O1G G:ATP301 4.4 40.0 1.0 O1G H:ATP301 4.5 32.6 1.0 O2B G:ATP301 4.5 40.0 1.0 OE1 H:GLU125 4.5 29.8 1.0 OE1 G:GLU125 4.5 30.5 1.0 O1B G:ATP301 4.5 40.0 1.0 O3B H:ATP301 4.6 32.6 1.0 NZ G:LYS103 4.6 27.2 1.0 O3B G:ATP301 4.6 40.0 1.0 NZ H:LYS103 4.6 30.8 1.0 PB H:ATP301 4.7 32.6 1.0 PB G:ATP301 4.7 40.0 1.0

Y.K.Chang, W.T.Chiang, N.J.Hu, M.D.Tsai. Potassium Transporter Ktrab From Bacillus Subtilis in Atp-Bound State with Addition of MGCL2 To Be Published.