Sodium in PDB 8hdh: Structure of Human SGLT2-MAP17 Complex with Canagliflozin

The structure of Structure of Human SGLT2-MAP17 Complex with Canagliflozin also contains other interesting chemical elements:

Fluorine

(F)

1 atom

The binding sites of Sodium atom in the Structure of Human SGLT2-MAP17 Complex with Canagliflozin (pdb code 8hdh). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of Human SGLT2-MAP17 Complex with Canagliflozin, PDB code: 8hdh:

Sodium binding site 1 out of 1 in the Structure of Human SGLT2-MAP17 Complex with Canagliflozin


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Human SGLT2-MAP17 Complex with Canagliflozin within 5.0Å range: probe atom residue distance (Å) B Occ A:Na803 b:78.2 occ:1.00 O A:ALA73 2.0 64.9 1.0 OG A:SER393 2.3 54.9 1.0 O A:ILE76 2.3 50.2 1.0 OG A:SER392 2.6 44.3 1.0 O A:ALA389 2.7 55.0 1.0 C A:ILE76 3.2 48.0 1.0 C A:ALA73 3.2 56.1 1.0 N A:SER393 3.3 61.8 1.0 CB A:SER393 3.4 69.1 1.0 CB A:SER392 3.6 54.2 1.0 C A:ALA389 3.6 59.5 1.0 CA A:SER393 3.7 60.1 1.0 CA A:ALA389 3.8 52.5 1.0 N A:GLY77 3.9 52.0 1.0 C A:SER392 3.9 55.6 1.0 CA A:ALA73 4.0 47.4 1.0 CA A:GLY77 4.0 55.4 1.0 N A:ILE76 4.1 57.4 1.0 CA A:ILE76 4.2 54.8 1.0 CA A:SER392 4.2 55.3 1.0 N A:SER74 4.3 67.3 1.0 C A:SER74 4.3 62.4 1.0 C A:ASN75 4.4 57.5 1.0 O A:SER74 4.4 89.7 1.0 O A:ASN75 4.4 61.4 1.0 CA A:SER74 4.4 61.3 1.0 CB A:ALA73 4.6 47.0 1.0 CB A:ALA389 4.6 61.6 1.0 O A:ALA388 4.6 72.0 1.0 N A:SER392 4.7 50.9 1.0 CB A:ILE76 4.7 64.0 1.0 O A:SER392 4.7 71.7 1.0 N A:ASN75 4.8 55.8 1.0 CD1 A:ILE208 4.8 80.4 1.0 N A:LEU390 4.8 51.6 1.0

H.Masahiro, A.Tomoya, M.Kouta, K.Hiryouki, K.Taichi, M.Ikuko, T.Nao, N.Osamu. Structural Basis of Glucose Transport By the Human SGLT2-MAP17 Glucose Transporter To Be Published.