Sodium in PDB 8h8p: Crystal Structure of Thiomorpholine-Carboxylate Dehydrogenase From Candida Parapsilosis.

The structure of Crystal Structure of Thiomorpholine-Carboxylate Dehydrogenase From Candida Parapsilosis., PDB code: 8h8p was solved by M.V.N.Uma Mahesh, S.Abhishek, M.A.Faidh, E.Rajakumara, A.Chadha, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	22.84 / 2.50
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	84.755, 92.553, 169.864, 90, 90, 90
R / Rfree (%)	21.9 / 24.5

The structure of Crystal Structure of Thiomorpholine-Carboxylate Dehydrogenase From Candida Parapsilosis. also contains other interesting chemical elements:

Magnesium	(Mg)	2 atoms
Chlorine	(Cl)	4 atoms

The binding sites of Sodium atom in the Crystal Structure of Thiomorpholine-Carboxylate Dehydrogenase From Candida Parapsilosis. (pdb code 8h8p). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 4 binding sites of Sodium where determined in the Crystal Structure of Thiomorpholine-Carboxylate Dehydrogenase From Candida Parapsilosis., PDB code: 8h8p:
Jump to Sodium binding site number: 1; 2; 3; 4;

Sodium binding site 1 out of 4 in the Crystal Structure of Thiomorpholine-Carboxylate Dehydrogenase From Candida Parapsilosis.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Thiomorpholine-Carboxylate Dehydrogenase From Candida Parapsilosis. within 5.0Å range: probe atom residue distance (Å) B Occ B:Na408 b:78.2 occ:1.00 OE1 B:GLU297 4.0 53.8 1.0 O B:ALA38 4.3 56.3 1.0 OE2 B:GLU297 4.3 47.0 1.0 CD B:GLU297 4.4 48.0 1.0 CB B:ALA38 4.5 43.4 1.0 CA B:ALA38 4.9 49.1 1.0 OE2 B:GLU300 5.0 65.5 1.0

Sodium binding site 2 out of 4 in the Crystal Structure of Thiomorpholine-Carboxylate Dehydrogenase From Candida Parapsilosis.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Thiomorpholine-Carboxylate Dehydrogenase From Candida Parapsilosis. within 5.0Å range: probe atom residue distance (Å) B Occ A:Na404 b:75.4 occ:1.00 OE1 A:GLU303 3.3 86.5 1.0 OE2 A:GLU303 3.9 74.6 1.0 OE2 A:GLU300 3.9 76.8 1.0 CD A:GLU303 4.0 79.1 1.0 CE1 A:HIS299 4.4 76.2 1.0 CD A:GLU300 4.8 72.9 1.0 CG A:GLU300 4.8 65.6 1.0

Sodium binding site 3 out of 4 in the Crystal Structure of Thiomorpholine-Carboxylate Dehydrogenase From Candida Parapsilosis.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Crystal Structure of Thiomorpholine-Carboxylate Dehydrogenase From Candida Parapsilosis. within 5.0Å range: probe atom residue distance (Å) B Occ A:Na405 b:67.8 occ:1.00 OD1 A:ASP293 3.8 83.1 1.0 CG A:ASP293 4.2 78.6 1.0 CB A:ASP293 4.6 70.2 1.0 OD2 A:ASP293 4.9 84.0 1.0 CG C:PRO82 4.9 64.2 1.0

Sodium binding site 4 out of 4 in the Crystal Structure of Thiomorpholine-Carboxylate Dehydrogenase From Candida Parapsilosis.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 4 of Crystal Structure of Thiomorpholine-Carboxylate Dehydrogenase From Candida Parapsilosis. within 5.0Å range: probe atom residue distance (Å) B Occ A:Na406 b:67.0 occ:1.00 OE2 A:GLU194 4.1 80.5 1.0 OE1 A:GLU194 4.6 82.9 1.0 CD A:GLU194 4.8 82.4 1.0

M.V.N.Uma Mahesh, S.Abhishek, M.A.Faidh, E.Rajakumara, A.Chadha. Structure and Mechanism of A Ornithine Cyclodeaminase/Mu-Crystallin Homolog Purified From Candida Parapsilosis Atcc 7330. To Be Published.