Sodium in PDB 8fwa: Phycocyanin Structure From A Modular Droplet Injector For Serial Femtosecond Crystallography

The structure of Phycocyanin Structure From A Modular Droplet Injector For Serial Femtosecond Crystallography, PDB code: 8fwa was solved by S.Botha, D.L.Doppler, M.Sonker, A.Egatz-Gomez, A.Grieco, S.Zaare, R.Jernigan, J.D.Meza-Aguilar, M.T.Rabbani, A.Manna, R.Alvarez, K.Karpos, J.Cruz Villarreal, G.Nelson, G.K.Ketawala, A.L.Pey, M.A.Ruiz-Fresneda, J.L.Pacheco-Garcia, R.Nazari, R.Sierra, M.S.Hunter, A.Batyuk, C.J.Kupitz, R.E.Sublett, S.Lisova, V.Mariani, S.Boutet, R.Fromme, T.D.Grant, P.Fromme, R.A.Kirian, J.M.Martin-Garcia, A.Ros, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	22.31 / 2.00
Space group	H 3 2
Cell size a, b, c (Å), α, β, γ (°)	188.3, 188.3, 61.1, 90, 90, 120
R / Rfree (%)	20.4 / 24.5

The binding sites of Sodium atom in the Phycocyanin Structure From A Modular Droplet Injector For Serial Femtosecond Crystallography (pdb code 8fwa). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Phycocyanin Structure From A Modular Droplet Injector For Serial Femtosecond Crystallography, PDB code: 8fwa:

Sodium binding site 1 out of 1 in the Phycocyanin Structure From A Modular Droplet Injector For Serial Femtosecond Crystallography


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Phycocyanin Structure From A Modular Droplet Injector For Serial Femtosecond Crystallography within 5.0Å range: probe atom residue distance (Å) B Occ B:Na203 b:35.8 occ:1.00 O B:ASP101 2.7 31.1 1.0 O B:LEU2 2.8 27.7 1.0 OG B:SER103 3.1 27.6 1.0 N B:VAL104 3.3 28.9 1.0 C B:ASP101 3.5 28.5 1.0 CB B:ALA99 3.5 22.9 1.0 CG1 B:VAL104 3.6 29.7 1.0 N B:SER103 3.7 29.9 1.0 OD2 B:ASP101 3.7 33.5 1.0 CB B:VAL104 3.7 29.5 1.0 CB B:ASP101 3.9 29.7 1.0 CA B:VAL104 4.1 29.0 1.0 C B:LEU2 4.1 28.0 1.0 CA B:ASP101 4.1 28.6 1.0 CA B:SER103 4.2 29.8 1.0 CB B:SER103 4.2 28.8 1.0 C B:SER103 4.2 28.5 1.0 C B:SER102 4.2 29.7 1.0 CG B:ASP101 4.3 32.4 1.0 N B:SER102 4.3 28.1 1.0 N B:ASP101 4.5 26.6 1.0 CA B:SER102 4.6 29.0 1.0 N B:LEU2 4.6 32.0 1.0 CA B:ALA96 4.7 21.3 1.0 CB B:MET1 4.8 47.6 1.0 O B:SER102 4.8 30.4 1.0 CA B:ALA99 4.9 23.4 1.0 CA B:ASP3 4.9 23.2 1.0 N B:ASP3 5.0 24.8 1.0 CA B:LEU2 5.0 30.0 1.0

D.Doppler, M.Sonker, A.Egatz-Gomez, A.Grieco, S.Zaare, R.Jernigan, J.D.Meza-Aguilar, M.T.Rabbani, A.Manna, R.C.Alvarez, K.Karpos, J.Cruz Villarreal, G.Nelson, J.H.Yang, J.Carrion, K.Morin, G.K.Ketawala, A.L.Pey, M.A.Ruiz-Fresneda, J.L.Pacheco-Garcia, J.A.Hermoso, R.Nazari, R.Sierra, M.S.Hunter, A.Batyuk, C.J.Kupitz, R.E.Sublett, S.Lisova, V.Mariani, S.Boutet, R.Fromme, T.D.Grant, S.Botha, P.Fromme, R.A.Kirian, J.M.Martin-Garcia, A.Ros. Modular Droplet Injector For Sample Conservation Providing New Structural Insight For the Conformational Heterogeneity in the Disease-Associated NQO1 Enzyme. Lab Chip 2023.
ISSN: ISSN 1473-0189
PubMed: 37294576
DOI: 10.1039/D3LC00176H