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Sodium in PDB 8bgz: O-Methyltransferase PLU4890 (Mutant H229N) in Complex with Sah and Aq- 256

Protein crystallography data

The structure of O-Methyltransferase PLU4890 (Mutant H229N) in Complex with Sah and Aq- 256, PDB code: 8bgz was solved by E.M.Huber, M.Groll, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.00
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 63.35, 77.59, 167.6, 90, 95.27, 90
R / Rfree (%) 17.2 / 21

Sodium Binding Sites:

The binding sites of Sodium atom in the O-Methyltransferase PLU4890 (Mutant H229N) in Complex with Sah and Aq- 256 (pdb code 8bgz). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the O-Methyltransferase PLU4890 (Mutant H229N) in Complex with Sah and Aq- 256, PDB code: 8bgz:

Sodium binding site 1 out of 1 in 8bgz

Go back to Sodium Binding Sites List in 8bgz
Sodium binding site 1 out of 1 in the O-Methyltransferase PLU4890 (Mutant H229N) in Complex with Sah and Aq- 256


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of O-Methyltransferase PLU4890 (Mutant H229N) in Complex with Sah and Aq- 256 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na407

b:44.1
occ:1.00
OD1 A:ASP66 2.5 62.9 1.0
O A:HOH604 3.1 50.1 1.0
CG A:ASP66 3.3 60.9 1.0
CB A:ASP66 3.6 55.2 1.0
CA A:ASP66 3.7 52.5 1.0
N A:ASP66 4.2 48.7 1.0
OD2 A:ASP66 4.5 64.3 1.0
C A:ASP66 5.0 52.8 1.0

Reference:

E.M.Huber, L.Kreling, A.K.Heinrich, M.Duennebacke, A.Poethig, H.B.Bode, M.Groll. A Set of Closely Related Methyltransferases For Site-Specific Tailoring of Anthraquinone Pigments Structure 2023.
ISSN: ISSN 0969-2126
Page generated: Wed Oct 9 10:44:11 2024

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