Sodium in PDB 7z94: Crystal Structure of Variovorax Paradoxus Indole Monooxygenase (VPINDA1) in Complex with Indole

The structure of Crystal Structure of Variovorax Paradoxus Indole Monooxygenase (VPINDA1) in Complex with Indole, PDB code: 7z94 was solved by J.Kratky, R.Weisse, N.Strater, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.68 / 1.74
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	93.938, 93.938, 110.867, 90, 90, 120
R / Rfree (%)	16.2 / 18.8

The binding sites of Sodium atom in the Crystal Structure of Variovorax Paradoxus Indole Monooxygenase (VPINDA1) in Complex with Indole (pdb code 7z94). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Variovorax Paradoxus Indole Monooxygenase (VPINDA1) in Complex with Indole, PDB code: 7z94:

Sodium binding site 1 out of 1 in the Crystal Structure of Variovorax Paradoxus Indole Monooxygenase (VPINDA1) in Complex with Indole


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Variovorax Paradoxus Indole Monooxygenase (VPINDA1) in Complex with Indole within 5.0Å range: probe atom residue distance (Å) B Occ A:Na511 b:44.7 occ:1.00 O A:HOH723 2.7 41.4 1.0 HZ1 A:LYS88 3.4 39.5 1.0 HZ2 A:LYS88 3.9 39.5 1.0 HE3 A:LYS88 4.0 37.7 1.0 NZ A:LYS88 4.1 33.1 1.0 OD2 A:ASP91 4.1 30.1 1.0 CE A:LYS88 4.6 31.7 1.0 HZ3 A:LYS88 4.8 39.5 1.0 HE2 A:LYS88 5.0 37.7 1.0

J.Kratky, D.Eggerichs, T.Heine, S.Hofmann, P.Sowa, R.H.Weisse, D.Tischler, N.Strater. Structural and Mechanistical Studies on Substrate and Stereo Selectivity of the Indole Monooxygenase VPINDA1: New Avenues For Biocatalytic Epoxidations and Sulfoxidations. Angew.Chem.Int.Ed.Engl. 00657 2023.
ISSN: ESSN 1521-3773
PubMed: 36762980
DOI: 10.1002/ANIE.202300657