Sodium in PDB 7yyg: Crystal Structure of Gatekeeper of Type III Secretion System in Bordetella Bopn

The structure of Crystal Structure of Gatekeeper of Type III Secretion System in Bordetella Bopn, PDB code: 7yyg was solved by T.Prudnikova, I.Kuta Smatanova, J.Kamanova, L.Bumba, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.93 / 1.95
Space group	P 42 2 2
Cell size a, b, c (Å), α, β, γ (°)	84.859, 84.859, 102.565, 90, 90, 90
R / Rfree (%)	18 / 20.7

The structure of Crystal Structure of Gatekeeper of Type III Secretion System in Bordetella Bopn also contains other interesting chemical elements:

Calcium	(Ca)	1 atom
Chlorine	(Cl)	1 atom

The binding sites of Sodium atom in the Crystal Structure of Gatekeeper of Type III Secretion System in Bordetella Bopn (pdb code 7yyg). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Gatekeeper of Type III Secretion System in Bordetella Bopn, PDB code: 7yyg:

Sodium binding site 1 out of 1 in the Crystal Structure of Gatekeeper of Type III Secretion System in Bordetella Bopn


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Gatekeeper of Type III Secretion System in Bordetella Bopn within 5.0Å range: probe atom residue distance (Å) B Occ A:Na402 b:47.8 occ:0.50 O A:HOH513 2.4 28.9 1.0 OE1 A:GLN228 3.1 37.9 1.0 O A:HOH612 3.2 40.8 1.0 C A:GLY224 3.9 29.2 1.0 CA A:GLY224 3.9 27.4 1.0 N A:ALA225 4.0 27.0 1.0 O A:GLY221 4.2 31.1 1.0 O A:GLY224 4.3 29.3 1.0 CD A:GLN228 4.3 35.4 1.0 O A:HOH640 4.3 35.9 1.0 CA A:ALA225 4.8 27.1 1.0 CA A:GLY221 4.8 29.9 1.0 N A:GLY224 4.9 27.4 1.0 C A:GLY221 5.0 31.6 1.0

K.Navarette, T.Romero Allsop, I.Malcova, T.Prudnikova, I.Kuta Smatanova, L.Bumba, J.Kamanova. Bopn Functions As A Gatekeeper in Bordetella Type III Secretion System To Be Published.