Sodium in PDB 7ytw: Structural Basis of Vitamin C Recognition and Transport By Mammalian SVCT1 Transporter

The binding sites of Sodium atom in the Structural Basis of Vitamin C Recognition and Transport By Mammalian SVCT1 Transporter (pdb code 7ytw). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 4 binding sites of Sodium where determined in the Structural Basis of Vitamin C Recognition and Transport By Mammalian SVCT1 Transporter, PDB code: 7ytw:
Jump to Sodium binding site number: 1; 2; 3; 4;

Sodium binding site 1 out of 4 in the Structural Basis of Vitamin C Recognition and Transport By Mammalian SVCT1 Transporter


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structural Basis of Vitamin C Recognition and Transport By Mammalian SVCT1 Transporter within 5.0Å range: probe atom residue distance (Å) B Occ A:Na701 b:45.2 occ:1.00 O1 A:ASC703 2.2 36.2 1.0 O A:SER388 2.5 40.4 1.0 OG A:SER390 2.5 41.2 1.0 OE2 A:GLU341 2.5 40.9 1.0 OD2 A:ASP345 2.8 42.5 1.0 C1 A:ASC703 2.9 29.1 1.0 N A:SER390 3.0 41.2 1.0 CB A:SER390 3.2 41.2 1.0 O4 A:ASC703 3.4 26.6 1.0 CD A:GLU341 3.5 40.9 1.0 C A:SER388 3.7 40.4 1.0 CA A:SER390 3.7 41.2 1.0 CG A:ASP345 3.7 42.5 1.0 C A:SER389 3.9 40.4 1.0 CG A:GLU341 3.9 40.9 1.0 C2 A:ASC703 3.9 32.7 1.0 CA A:SER389 4.0 40.4 1.0 OD1 A:ASP345 4.0 42.5 1.0 N A:SER389 4.3 40.4 1.0 O2 A:ASC703 4.5 32.9 1.0 CG2 A:THR387 4.5 38.5 1.0 OG1 A:THR387 4.6 38.5 1.0 OE1 A:GLU341 4.6 40.9 1.0 C4 A:ASC703 4.6 24.9 1.0 C3 A:ASC703 4.8 29.8 1.0 CA A:SER388 4.9 40.4 1.0 O A:SER389 4.9 40.4 1.0

Sodium binding site 2 out of 4 in the Structural Basis of Vitamin C Recognition and Transport By Mammalian SVCT1 Transporter


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Structural Basis of Vitamin C Recognition and Transport By Mammalian SVCT1 Transporter within 5.0Å range: probe atom residue distance (Å) B Occ A:Na702 b:33.9 occ:1.00 O A:HOH801 2.6 33.3 1.0 O2 A:ASC703 2.8 32.9 1.0 CG2 A:ILE202 3.7 28.6 1.0 CG2 A:ILE446 3.7 29.6 1.0 C2 A:ASC703 3.8 32.7 1.0 O1 A:ASC703 4.0 36.2 1.0 OE1 A:GLU341 4.0 40.9 1.0 CG1 A:VAL199 4.2 27.3 1.0 CB A:PHE119 4.3 34.0 1.0 C1 A:ASC703 4.3 29.1 1.0 OE2 A:GLU341 4.3 40.9 1.0 CD A:GLU341 4.4 40.9 1.0 CB A:ILE202 4.4 28.6 1.0 N A:ALA120 4.4 33.2 1.0 CD2 A:PHE119 4.5 34.0 1.0 CG1 A:ILE202 4.6 28.6 1.0 C A:PHE119 4.8 34.0 1.0 N A:PHE119 4.8 34.0 1.0 CG1 A:ILE446 4.8 29.6 1.0 CA A:PHE119 4.9 34.0 1.0 CG A:PHE119 4.9 34.0 1.0 CB A:ILE446 4.9 29.6 1.0 C3 A:ASC703 4.9 29.8 1.0

Sodium binding site 3 out of 4 in the Structural Basis of Vitamin C Recognition and Transport By Mammalian SVCT1 Transporter


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Structural Basis of Vitamin C Recognition and Transport By Mammalian SVCT1 Transporter within 5.0Å range: probe atom residue distance (Å) B Occ B:Na701 b:45.2 occ:1.00 O1 B:ASC703 2.2 36.2 1.0 O B:SER388 2.5 40.4 1.0 OG B:SER390 2.5 41.2 1.0 OE2 B:GLU341 2.5 40.9 1.0 OD2 B:ASP345 2.8 42.5 1.0 C1 B:ASC703 2.9 29.1 1.0 N B:SER390 3.0 41.2 1.0 CB B:SER390 3.2 41.2 1.0 O4 B:ASC703 3.4 26.6 1.0 CD B:GLU341 3.5 40.9 1.0 C B:SER388 3.7 40.4 1.0 CA B:SER390 3.7 41.2 1.0 CG B:ASP345 3.7 42.5 1.0 C B:SER389 3.9 40.4 1.0 CG B:GLU341 3.9 40.9 1.0 C2 B:ASC703 3.9 32.7 1.0 CA B:SER389 4.0 40.4 1.0 OD1 B:ASP345 4.0 42.5 1.0 N B:SER389 4.3 40.4 1.0 O2 B:ASC703 4.5 32.9 1.0 CG2 B:THR387 4.5 38.5 1.0 OG1 B:THR387 4.6 38.5 1.0 OE1 B:GLU341 4.6 40.9 1.0 C4 B:ASC703 4.6 24.9 1.0 C3 B:ASC703 4.8 29.8 1.0 CA B:SER388 4.9 40.4 1.0 O B:SER389 4.9 40.4 1.0

Sodium binding site 4 out of 4 in the Structural Basis of Vitamin C Recognition and Transport By Mammalian SVCT1 Transporter


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 4 of Structural Basis of Vitamin C Recognition and Transport By Mammalian SVCT1 Transporter within 5.0Å range: probe atom residue distance (Å) B Occ B:Na702 b:33.9 occ:1.00 O B:HOH801 2.6 33.3 1.0 O2 B:ASC703 2.8 32.9 1.0 CG2 B:ILE202 3.7 28.6 1.0 CG2 B:ILE446 3.7 29.6 1.0 C2 B:ASC703 3.8 32.7 1.0 O1 B:ASC703 4.0 36.2 1.0 OE1 B:GLU341 4.0 40.9 1.0 CG1 B:VAL199 4.2 27.3 1.0 CB B:PHE119 4.3 34.0 1.0 C1 B:ASC703 4.3 29.1 1.0 OE2 B:GLU341 4.3 40.9 1.0 CD B:GLU341 4.4 40.9 1.0 CB B:ILE202 4.4 28.6 1.0 N B:ALA120 4.4 33.2 1.0 CD2 B:PHE119 4.5 34.0 1.0 CG1 B:ILE202 4.6 28.6 1.0 C B:PHE119 4.8 34.0 1.0 N B:PHE119 4.8 34.0 1.0 CG1 B:ILE446 4.8 29.6 1.0 CA B:PHE119 4.9 34.0 1.0 CG B:PHE119 4.9 34.0 1.0 CB B:ILE446 4.9 29.6 1.0 C3 B:ASC703 4.9 29.8 1.0

M.Wang, J.He, S.Li, Q.Cai, K.Zhang, J.She. Structural Basis of Vitamin C Recognition and Transport By Mammalian SVCT1 Transporter. Nat Commun V. 14 1361 2023.
ISSN: ESSN 2041-1723
PubMed: 36914666
DOI: 10.1038/S41467-023-37037-3