Sodium in PDB 7w9k: Cryo-Em Structure of Human NAV1.7-BETA1-BETA2 Complex at 2.2 Angstrom Resolution

The binding sites of Sodium atom in the Cryo-Em Structure of Human NAV1.7-BETA1-BETA2 Complex at 2.2 Angstrom Resolution (pdb code 7w9k). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Cryo-Em Structure of Human NAV1.7-BETA1-BETA2 Complex at 2.2 Angstrom Resolution, PDB code: 7w9k:

Sodium binding site 1 out of 1 in the Cryo-Em Structure of Human NAV1.7-BETA1-BETA2 Complex at 2.2 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Cryo-Em Structure of Human NAV1.7-BETA1-BETA2 Complex at 2.2 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Na2010 b:30.0 occ:1.00 OE2 A:GLU930 2.8 4.1 1.0 O A:HOH2107 3.0 30.0 1.0 OD1 A:ASP361 3.0 2.8 1.0 N A:GLU930 3.4 4.1 1.0 CB A:GLU927 3.4 2.7 1.0 N A:TRP928 3.5 2.9 1.0 CD A:GLU930 3.5 4.1 1.0 OD2 A:ASP361 3.6 2.8 1.0 CG A:GLU930 3.6 4.1 1.0 N A:ILE929 3.6 2.5 1.0 CA A:GLU927 3.6 2.7 1.0 C A:GLU927 3.6 2.7 1.0 CG2 A:ILE929 3.7 2.5 1.0 CG A:ASP361 3.7 2.8 1.0 CB A:GLU930 3.9 4.1 1.0 C A:TRP928 4.1 2.9 1.0 CG A:GLU927 4.2 2.7 1.0 CA A:GLU930 4.2 4.1 1.0 CA A:ILE929 4.2 2.5 1.0 NH1 A:ARG922 4.2 1.4 1.0 C A:ILE929 4.3 2.5 1.0 CA A:TRP928 4.3 2.9 1.0 O A:GLU927 4.4 2.7 1.0 CB A:ILE929 4.5 2.5 1.0 CB A:TYR362 4.5 2.4 1.0 OE2 A:GLU927 4.6 2.7 1.0 CD A:GLU927 4.7 2.7 1.0 OE1 A:GLU930 4.7 4.1 1.0 CZ A:ARG922 4.8 1.4 1.0 NE A:ARG922 4.8 1.4 1.0 O A:TRP928 4.8 2.9 1.0

G.Huang, D.Liu, W.Wang, Q.Wu, J.Chen, X.Pan, H.Shen, N.Yan. High-Resolution Structures of Human Na V 1.7 Reveal Gating Modulation Through Alpha-Pi Helical Transition of S6 IV. Cell Rep V. 39 10735 2022.
ISSN: ESSN 2211-1247
PubMed: 35476982
DOI: 10.1016/J.CELREP.2022.110735