Sodium in PDB 7vyy: The Crystal Structure of Non-Hydrolyzing Udpglcnac 2-Epimerase

The structure of The Crystal Structure of Non-Hydrolyzing Udpglcnac 2-Epimerase, PDB code: 7vyy was solved by T.L.Li, R.Rajesh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.45 / 2.44
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	112.349, 106.052, 94.343, 90, 124.87, 90
R / Rfree (%)	22.8 / 27.2

The binding sites of Sodium atom in the The Crystal Structure of Non-Hydrolyzing Udpglcnac 2-Epimerase (pdb code 7vyy). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the The Crystal Structure of Non-Hydrolyzing Udpglcnac 2-Epimerase, PDB code: 7vyy:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the The Crystal Structure of Non-Hydrolyzing Udpglcnac 2-Epimerase


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Crystal Structure of Non-Hydrolyzing Udpglcnac 2-Epimerase within 5.0Å range: probe atom residue distance (Å) B Occ A:Na401 b:20.8 occ:1.00 O A:PHE31 2.3 27.6 1.0 O A:ASP28 2.4 28.7 1.0 O A:ASP26 2.5 35.9 1.0 O A:HOH528 2.7 23.1 1.0 O A:LEU25 2.7 30.1 1.0 C A:ASP26 3.4 33.8 1.0 C A:PHE31 3.5 29.0 1.0 C A:ASP28 3.5 33.0 1.0 CA A:ASP26 3.7 34.1 1.0 C A:LEU25 3.8 31.4 1.0 OE1 A:GLU32 4.1 43.6 1.0 N A:ASP26 4.2 33.6 1.0 CA A:PRO29 4.2 33.2 1.0 N A:ASP28 4.3 31.5 1.0 N A:PRO29 4.3 35.2 1.0 N A:PHE31 4.4 29.0 1.0 N A:GLU32 4.4 30.8 1.0 N A:ALA27 4.4 32.3 1.0 CA A:GLU32 4.5 33.2 1.0 CA A:PHE31 4.5 28.2 1.0 CD A:PRO33 4.5 31.6 1.0 CA A:ASP28 4.5 32.2 1.0 C A:ALA27 4.6 32.1 1.0 C A:PRO29 4.6 31.1 1.0 CB A:PHE31 4.9 27.2 1.0 O A:PRO29 4.9 29.8 1.0 O A:ALA27 4.9 34.3 1.0 OD1 A:ASP26 5.0 42.6 1.0

Sodium binding site 2 out of 2 in the The Crystal Structure of Non-Hydrolyzing Udpglcnac 2-Epimerase


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of The Crystal Structure of Non-Hydrolyzing Udpglcnac 2-Epimerase within 5.0Å range: probe atom residue distance (Å) B Occ B:Na401 b:55.2 occ:1.00 O B:PHE31 2.3 53.5 1.0 O B:ASP28 2.5 68.9 1.0 O B:ASP26 2.6 53.9 1.0 O B:LEU25 2.8 62.0 1.0 C B:PHE31 3.4 51.8 1.0 C B:ASP26 3.5 57.5 1.0 OE1 B:GLU32 3.5 62.0 1.0 C B:ASP28 3.6 67.3 1.0 CA B:ASP26 3.8 57.0 1.0 C B:LEU25 3.9 56.3 1.0 CA B:PRO29 4.2 67.4 1.0 N B:GLU32 4.3 52.7 1.0 N B:ASP26 4.3 55.5 1.0 CA B:GLU32 4.3 53.8 1.0 N B:PHE31 4.4 52.3 1.0 N B:PRO29 4.4 68.1 1.0 CA B:PHE31 4.4 51.4 1.0 N B:ASP28 4.4 64.5 1.0 CD B:PRO33 4.5 53.4 1.0 N B:ALA27 4.5 59.5 1.0 C B:PRO29 4.6 64.7 1.0 CA B:ASP28 4.6 63.7 1.0 CD B:GLU32 4.7 61.7 1.0 C B:ALA27 4.7 63.3 1.0 O B:PRO29 4.8 61.6 1.0 CB B:PHE31 4.9 47.4 1.0

T.L.Li, R.Rajesh. The Crystal Structure of Non-Hydrolyzing Udpglcnac 2-Epimerase To Be Published.