Sodium in PDB 7vkb: Crystal Structure of the A Bacterial Kinase Complex

The structure of Crystal Structure of the A Bacterial Kinase Complex, PDB code: 7vkb was solved by X.Zhen, S.Y.Ouyang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	31.87 / 1.82
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	45.22, 45.22, 394.55, 90, 90, 90
R / Rfree (%)	20.5 / 24.6

The binding sites of Sodium atom in the Crystal Structure of the A Bacterial Kinase Complex (pdb code 7vkb). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the A Bacterial Kinase Complex, PDB code: 7vkb:

Sodium binding site 1 out of 1 in the Crystal Structure of the A Bacterial Kinase Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the A Bacterial Kinase Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Na401 b:65.9 occ:1.00 NZ A:LYS296 3.3 56.0 1.0 CE A:LYS296 3.3 54.7 1.0 CD A:LYS296 4.8 50.9 1.0

X.Zhen, Y.Wu, J.Ge, J.Fu, L.Ye, N.Lin, Z.Huang, Z.Liu, Z.Q.Luo, J.Qiu, S.Ouyang. Molecular Mechanism of Toxin Neutralization in the Hipbst Toxin-Antitoxin System of Legionella Pneumophila. Nat Commun V. 13 4333 2022.
ISSN: ESSN 2041-1723
PubMed: 35882877
DOI: 10.1038/S41467-022-32049-X