Sodium in PDB 7uvs: PFS230 Domain 1 Bound By LMIV230-02 Fab

Protein crystallography data

The structure of PFS230 Domain 1 Bound By LMIV230-02 Fab, PDB code: 7uvs was solved by D.Ivanochko, J.P.Julien, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.85 / 2.06
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 92.36, 132.47, 125.07, 90, 102.35, 90
R / Rfree (%) 17.4 / 21.5

Sodium Binding Sites:

The binding sites of Sodium atom in the PFS230 Domain 1 Bound By LMIV230-02 Fab (pdb code 7uvs). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the PFS230 Domain 1 Bound By LMIV230-02 Fab, PDB code: 7uvs:

Sodium binding site 1 out of 1 in 7uvs

Go back to Sodium Binding Sites List in 7uvs
Sodium binding site 1 out of 1 in the PFS230 Domain 1 Bound By LMIV230-02 Fab


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of PFS230 Domain 1 Bound By LMIV230-02 Fab within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Na801

b:52.2
occ:1.00
OH C:TYR703 2.7 30.6 1.0
CD C:LYS653 2.8 49.2 1.0
OE1 C:GLU568 2.8 37.1 1.0
NZ C:LYS653 3.3 47.5 1.0
O C:HOH915 3.5 40.8 1.0
CE C:LYS653 3.5 45.5 1.0
CD C:GLU568 3.6 39.8 1.0
CZ C:TYR703 3.6 33.3 1.0
O C:HOH920 3.6 50.0 1.0
O C:HOH949 3.9 38.1 1.0
O C:HOH980 3.9 47.5 1.0
CG C:LYS653 4.0 32.0 1.0
CE2 C:TYR703 4.1 35.3 1.0
OE2 C:GLU568 4.2 41.4 1.0
OE2 C:GLU724 4.3 30.6 1.0
CG C:GLU568 4.4 39.1 1.0
NZ C:LYS610 4.5 39.8 1.0
CE1 C:TYR703 4.5 31.4 1.0

Reference:

D.Ivanochko, J.P.Julien. PFS230 Domain 1 Bound By LMIV230-02 Fab To Be Published.
Page generated: Fri Apr 7 16:41:29 2023

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