Sodium in PDB 7uh6: Asp-Bound Gltph Rsmr Mutant in Ifs-B2 State

The structure of Asp-Bound Gltph Rsmr Mutant in Ifs-B2 State also contains other interesting chemical elements:

Fluorine

(F)

1 atom

The binding sites of Sodium atom in the Asp-Bound Gltph Rsmr Mutant in Ifs-B2 State (pdb code 7uh6). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 3 binding sites of Sodium where determined in the Asp-Bound Gltph Rsmr Mutant in Ifs-B2 State, PDB code: 7uh6:
Jump to Sodium binding site number: 1; 2; 3;

Sodium binding site 1 out of 3 in the Asp-Bound Gltph Rsmr Mutant in Ifs-B2 State


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Asp-Bound Gltph Rsmr Mutant in Ifs-B2 State within 5.0Å range: probe atom residue distance (Å) B Occ A:Na502 b:135.2 occ:1.00 OD2 A:ASP405 2.5 138.7 1.0 O A:ASN310 2.5 144.8 1.0 OD1 A:ASP405 3.1 138.7 1.0 CG A:ASP405 3.1 138.7 1.0 O A:ASN401 3.1 133.1 1.0 CE A:MET311 3.3 146.0 1.0 O A:GLY306 3.6 139.1 1.0 C A:ASN401 3.6 133.1 1.0 C A:ASN310 3.7 144.8 1.0 CB A:ASN401 3.7 133.1 1.0 O A:ALA307 3.7 136.4 1.0 CA A:ASN401 4.0 133.1 1.0 CB A:ASN310 4.1 144.8 1.0 N A:VAL402 4.3 135.3 1.0 CA A:ASN310 4.4 144.8 1.0 CG A:ASN310 4.4 144.8 1.0 C A:ALA307 4.5 136.4 1.0 CB A:ASP405 4.5 138.7 1.0 CG A:ASN401 4.6 133.1 1.0 N A:MET311 4.6 146.0 1.0 ND2 A:ASN310 4.7 144.8 1.0 CA A:VAL402 4.7 135.3 1.0 C A:GLY306 4.7 139.1 1.0 CA A:MET311 4.8 146.0 1.0 N A:ASN310 4.8 144.8 1.0 SD A:MET311 4.8 146.0 1.0 OD1 A:ASN310 4.9 144.8 1.0 CA A:ALA307 4.9 136.4 1.0 CB A:SER278 4.9 125.6 1.0

Sodium binding site 2 out of 3 in the Asp-Bound Gltph Rsmr Mutant in Ifs-B2 State


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Asp-Bound Gltph Rsmr Mutant in Ifs-B2 State within 5.0Å range: probe atom residue distance (Å) B Occ A:Na503 b:137.8 occ:1.00 O A:SER349 2.1 138.8 1.0 O A:THR308 2.5 133.3 1.0 O A:THR352 2.7 137.1 1.0 CG A:MET311 2.8 146.0 1.0 O A:ILE350 2.8 136.9 1.0 N A:THR352 2.9 137.1 1.0 CB A:THR352 3.0 137.1 1.0 C A:ILE350 3.2 136.9 1.0 CA A:THR352 3.2 137.1 1.0 C A:SER349 3.3 138.8 1.0 C A:THR352 3.3 137.1 1.0 SD A:MET311 3.4 146.0 1.0 CG2 A:THR308 3.6 133.3 1.0 C A:THR308 3.7 133.3 1.0 CA A:ILE350 3.7 136.9 1.0 C A:GLY351 3.8 134.6 1.0 N A:GLY351 3.8 134.6 1.0 OG1 A:THR352 3.8 137.1 1.0 N A:ILE350 3.9 136.9 1.0 CB A:MET311 4.0 146.0 1.0 CA A:THR308 4.2 133.3 1.0 CG2 A:THR352 4.2 137.1 1.0 CA A:GLY351 4.3 134.6 1.0 CA A:SER349 4.4 138.8 1.0 CB A:THR308 4.5 133.3 1.0 N A:ALA353 4.6 137.3 1.0 O A:GLY351 4.7 134.6 1.0 N A:ILE309 4.8 133.2 1.0 O A:ILE309 4.9 133.2 1.0 O A:ALA348 4.9 135.4 1.0 C A:ILE309 5.0 133.2 1.0

Sodium binding site 3 out of 3 in the Asp-Bound Gltph Rsmr Mutant in Ifs-B2 State


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Asp-Bound Gltph Rsmr Mutant in Ifs-B2 State within 5.0Å range: probe atom residue distance (Å) B Occ A:Na504 b:163.2 occ:1.00 OD1 A:ASP312 2.0 140.9 1.0 OG A:SER93 2.6 147.2 1.0 OG1 A:THR92 2.7 154.0 1.0 O A:TYR89 2.9 152.0 1.0 CG A:ASP312 3.0 140.9 1.0 N A:SER93 3.1 147.2 1.0 OD2 A:ASP312 3.3 140.9 1.0 OD1 A:ASN310 3.3 144.8 1.0 CA A:SER93 3.5 147.2 1.0 CB A:THR92 3.6 154.0 1.0 CB A:SER93 3.6 147.2 1.0 C A:THR92 3.7 154.0 1.0 C A:TYR89 3.9 152.0 1.0 CG A:ASN310 4.1 144.8 1.0 CA A:TYR89 4.1 152.0 1.0 CA A:THR92 4.1 154.0 1.0 CB A:TYR89 4.3 152.0 1.0 O A:THR92 4.3 154.0 1.0 CB A:ASP312 4.3 140.9 1.0 CA A:ASN310 4.5 144.8 1.0 N A:ASP312 4.5 140.9 1.0 N A:MET311 4.6 146.0 1.0 N A:THR92 4.6 154.0 1.0 CA A:ASP312 4.7 140.9 1.0 CB A:ASN310 4.7 144.8 1.0 ND2 A:ASN310 4.9 144.8 1.0 CG2 A:THR92 4.9 154.0 1.0

Y.Huang, K.Reddy, B.Qiu, W.Zhan, C.Bracken, D.Eliezer, O.Boudker. An Environmentally Ultrasensitive Fluorine Probe to Resolve Protein Conformational Ensembles By 19F uc(Nmr) and Cryo-Em To Be Published.