Sodium in PDB 7uh3: Asp-Bound Gltph Rsmr Mutant in Iofs State

The structure of Asp-Bound Gltph Rsmr Mutant in Iofs State also contains other interesting chemical elements:

Fluorine

(F)

1 atom

The binding sites of Sodium atom in the Asp-Bound Gltph Rsmr Mutant in Iofs State (pdb code 7uh3). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 3 binding sites of Sodium where determined in the Asp-Bound Gltph Rsmr Mutant in Iofs State, PDB code: 7uh3:
Jump to Sodium binding site number: 1; 2; 3;

Sodium binding site 1 out of 3 in the Asp-Bound Gltph Rsmr Mutant in Iofs State


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Asp-Bound Gltph Rsmr Mutant in Iofs State within 5.0Å range: probe atom residue distance (Å) B Occ A:Na502 b:135.2 occ:1.00 O A:SER349 2.3 143.2 1.0 O A:THR352 2.4 135.4 1.0 O A:ILE350 2.4 137.1 1.0 O A:THR308 2.4 130.7 1.0 C A:ILE350 2.8 137.1 1.0 OG1 A:THR352 3.1 135.4 1.0 CA A:ILE350 3.2 137.1 1.0 N A:THR352 3.3 135.4 1.0 C A:THR352 3.3 135.4 1.0 C A:SER349 3.4 143.2 1.0 SD A:MET311 3.4 143.3 1.0 CE A:MET311 3.6 143.3 1.0 C A:THR308 3.6 130.7 1.0 N A:GLY351 3.7 134.8 1.0 CA A:THR352 3.7 135.4 1.0 N A:ILE350 3.7 137.1 1.0 C A:GLY351 3.8 134.8 1.0 CB A:THR352 4.0 135.4 1.0 CG2 A:THR308 4.2 130.7 1.0 CA A:GLY351 4.2 134.8 1.0 CA A:THR308 4.4 130.7 1.0 CG A:MET311 4.4 143.3 1.0 N A:ALA353 4.5 130.1 1.0 O A:GLY351 4.6 134.8 1.0 N A:ILE309 4.6 131.8 1.0 CB A:ILE350 4.6 137.1 1.0 CA A:SER349 4.7 143.2 1.0 CA A:ILE309 4.8 131.8 1.0 CG2 A:ILE350 4.9 137.1 1.0 O A:ILE309 4.9 131.8 1.0 CB A:THR308 4.9 130.7 1.0

Sodium binding site 2 out of 3 in the Asp-Bound Gltph Rsmr Mutant in Iofs State


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Asp-Bound Gltph Rsmr Mutant in Iofs State within 5.0Å range: probe atom residue distance (Å) B Occ A:Na503 b:133.8 occ:1.00 O A:ASN310 2.3 139.9 1.0 O A:ASN401 2.9 140.4 1.0 CB A:ASN401 3.1 140.4 1.0 C A:ASN401 3.3 140.4 1.0 O A:GLY306 3.3 129.6 1.0 C A:ASN310 3.5 139.9 1.0 CA A:ASN401 3.6 140.4 1.0 N A:VAL402 4.1 141.9 1.0 CA A:ALA307 4.2 127.6 1.0 CG A:ASN401 4.2 140.4 1.0 C A:GLY306 4.2 129.6 1.0 OD1 A:ASP405 4.3 140.3 1.0 CG A:MET311 4.3 143.3 1.0 CB A:ASP405 4.4 140.3 1.0 CA A:MET311 4.4 143.3 1.0 N A:MET311 4.4 143.3 1.0 CB A:ASN310 4.5 139.9 1.0 CA A:ASN310 4.5 139.9 1.0 O A:ALA307 4.5 127.6 1.0 C A:ALA307 4.5 127.6 1.0 N A:ALA307 4.6 127.6 1.0 CA A:VAL402 4.6 141.9 1.0 CG A:ASP405 4.7 140.3 1.0 ND2 A:ASN401 4.7 140.4 1.0 CB A:SER278 4.7 118.7 1.0 O A:ASP501 4.8 134.5 1.0 N A:ASN310 4.9 139.9 1.0 N A:ASP405 4.9 140.3 1.0 OD1 A:ASN401 5.0 140.4 1.0 CG A:ASN310 5.0 139.9 1.0 OG A:SER278 5.0 118.7 1.0 CB A:MET311 5.0 143.3 1.0

Sodium binding site 3 out of 3 in the Asp-Bound Gltph Rsmr Mutant in Iofs State


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Asp-Bound Gltph Rsmr Mutant in Iofs State within 5.0Å range: probe atom residue distance (Å) B Occ A:Na504 b:155.5 occ:1.00 OD1 A:ASP312 1.9 149.0 1.0 OG A:SER93 2.4 156.9 1.0 OG1 A:THR92 2.4 154.1 1.0 O A:TYR89 2.5 144.9 1.0 N A:SER93 2.9 156.9 1.0 CG A:ASP312 2.9 149.0 1.0 OD1 A:ASN310 3.0 139.9 1.0 OD2 A:ASP312 3.2 149.0 1.0 CA A:SER93 3.3 156.9 1.0 CB A:SER93 3.4 156.9 1.0 C A:THR92 3.5 154.1 1.0 CB A:THR92 3.5 154.1 1.0 C A:TYR89 3.6 144.9 1.0 CG A:ASN310 3.9 139.9 1.0 CA A:THR92 4.0 154.1 1.0 CA A:TYR89 4.1 144.9 1.0 O A:THR92 4.2 154.1 1.0 CB A:ASP312 4.2 149.0 1.0 N A:THR92 4.4 154.1 1.0 N A:ASP312 4.5 149.0 1.0 ND2 A:ASN310 4.5 139.9 1.0 CA A:ASP312 4.6 149.0 1.0 O A:TYR88 4.6 145.4 1.0 CA A:ASN310 4.7 139.9 1.0 N A:LEU90 4.7 148.0 1.0 N A:MET311 4.8 143.3 1.0 CB A:ASN310 4.8 139.9 1.0 CG2 A:THR92 4.8 154.1 1.0 CB A:TYR89 4.8 144.9 1.0 C A:SER93 4.8 156.9 1.0 O A:LEU90 5.0 148.0 1.0

Y.Huang, K.Reddy, B.Qiu, W.Zhan, C.Bracken, D.Eliezer, O.Boudker. Environmentally Ultrasensitive Monofluoroethyl uc(Nmr) Probe For Monitoring Membrane Protein Equilibria To Be Published.