Sodium in PDB 7ugx: Asp-Bound Gltph Rsmr Mutant in Ifs-B1 State

The structure of Asp-Bound Gltph Rsmr Mutant in Ifs-B1 State also contains other interesting chemical elements:

Fluorine

(F)

1 atom

The binding sites of Sodium atom in the Asp-Bound Gltph Rsmr Mutant in Ifs-B1 State (pdb code 7ugx). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 3 binding sites of Sodium where determined in the Asp-Bound Gltph Rsmr Mutant in Ifs-B1 State, PDB code: 7ugx:
Jump to Sodium binding site number: 1; 2; 3;

Sodium binding site 1 out of 3 in the Asp-Bound Gltph Rsmr Mutant in Ifs-B1 State


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Asp-Bound Gltph Rsmr Mutant in Ifs-B1 State within 5.0Å range: probe atom residue distance (Å) B Occ A:Na502 b:138.1 occ:1.00 O A:GLY306 2.7 137.0 1.0 OD1 A:ASP405 2.7 136.3 1.0 O A:ASN310 2.9 133.2 1.0 O A:ASN401 2.9 128.8 1.0 C A:ASN310 3.2 133.2 1.0 CG A:ASP405 3.2 136.3 1.0 OD2 A:ASP405 3.3 136.3 1.0 O A:ALA307 3.6 135.1 1.0 N A:MET311 3.7 129.9 1.0 C A:ASN401 3.7 128.8 1.0 C A:GLY306 3.7 137.0 1.0 CB A:ASN310 3.8 133.2 1.0 CA A:ASN310 3.8 133.2 1.0 C A:ALA307 3.9 135.1 1.0 CA A:ALA307 3.9 135.1 1.0 N A:ASN310 4.0 133.2 1.0 CA A:MET311 4.0 129.9 1.0 CB A:ASN401 4.2 128.8 1.0 CA A:ASN401 4.2 128.8 1.0 N A:ALA307 4.3 135.1 1.0 CB A:ASP405 4.5 136.3 1.0 N A:VAL402 4.6 132.4 1.0 CG A:ASN310 4.6 133.2 1.0 CB A:MET311 4.7 129.9 1.0 CA A:GLY306 4.9 137.0 1.0 N A:THR308 4.9 131.7 1.0 CA A:VAL402 4.9 132.4 1.0

Sodium binding site 2 out of 3 in the Asp-Bound Gltph Rsmr Mutant in Ifs-B1 State


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Asp-Bound Gltph Rsmr Mutant in Ifs-B1 State within 5.0Å range: probe atom residue distance (Å) B Occ A:Na503 b:131.4 occ:1.00 O A:SER349 2.2 126.2 1.0 O A:THR308 2.4 131.7 1.0 O A:THR352 2.6 126.6 1.0 SD A:MET311 2.9 129.9 1.0 CE A:MET311 2.9 129.9 1.0 O A:ILE350 3.1 127.3 1.0 C A:THR308 3.3 131.7 1.0 C A:SER349 3.4 126.2 1.0 C A:ILE350 3.4 127.3 1.0 OG1 A:THR308 3.5 131.7 1.0 C A:THR352 3.5 126.6 1.0 CA A:ILE350 3.6 127.3 1.0 CB A:THR352 3.6 126.6 1.0 N A:THR352 3.7 126.6 1.0 CG A:MET311 3.7 129.9 1.0 CA A:THR352 3.8 126.6 1.0 N A:ILE350 4.0 127.3 1.0 CA A:THR308 4.0 131.7 1.0 N A:ILE309 4.3 132.7 1.0 N A:GLY351 4.3 126.4 1.0 CB A:THR308 4.3 131.7 1.0 C A:GLY351 4.5 126.4 1.0 CG2 A:THR352 4.5 126.6 1.0 OG1 A:THR352 4.6 126.6 1.0 CA A:ILE309 4.6 132.7 1.0 CA A:SER349 4.6 126.2 1.0 N A:ALA353 4.8 127.5 1.0 OG A:SER349 4.9 126.2 1.0 CB A:MET311 4.9 129.9 1.0 CA A:GLY351 5.0 126.4 1.0

Sodium binding site 3 out of 3 in the Asp-Bound Gltph Rsmr Mutant in Ifs-B1 State


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Asp-Bound Gltph Rsmr Mutant in Ifs-B1 State within 5.0Å range: probe atom residue distance (Å) B Occ A:Na504 b:136.0 occ:1.00 OG A:SER93 2.5 131.2 1.0 OG1 A:THR92 2.5 131.8 1.0 OD1 A:ASN310 2.5 133.2 1.0 OD1 A:ASP312 2.5 128.6 1.0 O A:TYR89 2.6 135.8 1.0 CG A:ASP312 3.0 128.6 1.0 OD2 A:ASP312 3.1 128.6 1.0 N A:SER93 3.1 131.2 1.0 CB A:THR92 3.4 131.8 1.0 CB A:SER93 3.5 131.2 1.0 CA A:SER93 3.6 131.2 1.0 C A:TYR89 3.6 135.8 1.0 CG A:ASN310 3.7 133.2 1.0 C A:THR92 3.7 131.8 1.0 CA A:TYR89 4.0 135.8 1.0 CA A:THR92 4.1 131.8 1.0 CA A:ASN310 4.3 133.2 1.0 CB A:ASP312 4.4 128.6 1.0 O A:THR92 4.5 131.8 1.0 C A:ASN310 4.5 133.2 1.0 N A:THR92 4.5 131.8 1.0 CB A:ASN310 4.5 133.2 1.0 ND2 A:ASN310 4.6 133.2 1.0 CA A:ASP312 4.6 128.6 1.0 O A:ASN310 4.6 133.2 1.0 CB A:TYR89 4.6 135.8 1.0 O A:TYR88 4.7 135.7 1.0 N A:ASP312 4.7 128.6 1.0 CG2 A:THR92 4.7 131.8 1.0 N A:LEU90 4.8 133.9 1.0

Y.Huang, K.Reddy, B.Qiu, W.Zhan, C.Bracken, D.Eliezer, O.Boudker. Environmentally Ultrasensitive Monofluoroethyl uc(Nmr) Probe For Monitoring Membrane Protein To Be Published.