Sodium in PDB 7ugv: Asp-Bound Gltph Rsmr Mutant in Ifs-A2 State

The structure of Asp-Bound Gltph Rsmr Mutant in Ifs-A2 State also contains other interesting chemical elements:

Fluorine

(F)

1 atom

The binding sites of Sodium atom in the Asp-Bound Gltph Rsmr Mutant in Ifs-A2 State (pdb code 7ugv). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 3 binding sites of Sodium where determined in the Asp-Bound Gltph Rsmr Mutant in Ifs-A2 State, PDB code: 7ugv:
Jump to Sodium binding site number: 1; 2; 3;

Sodium binding site 1 out of 3 in the Asp-Bound Gltph Rsmr Mutant in Ifs-A2 State


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Asp-Bound Gltph Rsmr Mutant in Ifs-A2 State within 5.0Å range: probe atom residue distance (Å) B Occ A:Na502 b:120.0 occ:1.00 O A:ASN310 2.1 118.7 1.0 OD2 A:ASP405 2.7 124.9 1.0 OD1 A:ASP405 2.9 124.9 1.0 O A:ASN401 3.0 116.9 1.0 O A:GLY306 3.0 117.7 1.0 O A:ALA307 3.1 115.9 1.0 CG A:ASP405 3.1 124.9 1.0 C A:ASN310 3.3 118.7 1.0 C A:ASN401 3.6 116.9 1.0 C A:ALA307 3.7 115.9 1.0 CA A:ALA307 3.7 115.9 1.0 CB A:ASN401 3.8 116.9 1.0 C A:GLY306 3.9 117.7 1.0 CA A:ASN401 4.0 116.9 1.0 CB A:ASN310 4.0 118.7 1.0 CA A:ASN310 4.1 118.7 1.0 N A:ALA307 4.3 115.9 1.0 N A:MET311 4.3 118.8 1.0 N A:ASN310 4.4 118.7 1.0 N A:VAL402 4.4 119.6 1.0 CG A:ASN310 4.5 118.7 1.0 CA A:MET311 4.5 118.8 1.0 CG A:MET311 4.6 118.8 1.0 CB A:ASP405 4.6 124.9 1.0 N A:THR308 4.8 116.4 1.0 CG A:ASN401 4.8 116.9 1.0 CA A:VAL402 4.8 119.6 1.0 OD1 A:ASN310 4.9 118.7 1.0 OG A:SER278 5.0 123.0 1.0 ND2 A:ASN310 5.0 118.7 1.0 CB A:ALA307 5.0 115.9 1.0

Sodium binding site 2 out of 3 in the Asp-Bound Gltph Rsmr Mutant in Ifs-A2 State


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Asp-Bound Gltph Rsmr Mutant in Ifs-A2 State within 5.0Å range: probe atom residue distance (Å) B Occ A:Na503 b:119.0 occ:1.00 O A:THR308 2.2 116.4 1.0 O A:SER349 2.5 112.3 1.0 O A:THR352 2.7 113.9 1.0 CE A:MET311 2.8 118.8 1.0 O A:ILE350 2.9 112.3 1.0 SD A:MET311 2.9 118.8 1.0 C A:THR308 3.3 116.4 1.0 C A:ILE350 3.4 112.3 1.0 N A:THR352 3.6 113.9 1.0 C A:SER349 3.6 112.3 1.0 C A:THR352 3.7 113.9 1.0 CG A:MET311 3.7 118.8 1.0 CA A:ILE350 3.8 112.3 1.0 CA A:THR308 4.0 116.4 1.0 CA A:THR352 4.0 113.9 1.0 N A:GLY351 4.2 112.3 1.0 CB A:THR352 4.2 113.9 1.0 N A:ILE350 4.2 112.3 1.0 C A:GLY351 4.2 112.3 1.0 N A:ILE309 4.4 113.4 1.0 CB A:THR308 4.4 116.4 1.0 CA A:GLY351 4.6 112.3 1.0 CA A:ILE309 4.7 113.4 1.0 CB A:MET311 4.7 118.8 1.0 O A:ILE309 4.7 113.4 1.0 C A:ILE309 4.8 113.4 1.0 CA A:SER349 4.9 112.3 1.0 N A:ALA353 4.9 115.0 1.0

Sodium binding site 3 out of 3 in the Asp-Bound Gltph Rsmr Mutant in Ifs-A2 State


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Asp-Bound Gltph Rsmr Mutant in Ifs-A2 State within 5.0Å range: probe atom residue distance (Å) B Occ A:Na504 b:126.5 occ:1.00 OD1 A:ASP312 2.2 118.7 1.0 O A:TYR89 2.4 122.5 1.0 OG1 A:THR92 2.5 120.2 1.0 OG A:SER93 2.5 117.9 1.0 OD1 A:ASN310 2.5 118.7 1.0 CG A:ASP312 3.1 118.7 1.0 CG A:ASN310 3.2 118.7 1.0 C A:TYR89 3.3 122.5 1.0 N A:SER93 3.3 117.9 1.0 OD2 A:ASP312 3.4 118.7 1.0 CA A:TYR89 3.5 122.5 1.0 CB A:SER93 3.6 117.9 1.0 ND2 A:ASN310 3.7 118.7 1.0 CB A:THR92 3.8 120.2 1.0 CA A:SER93 3.9 117.9 1.0 C A:THR92 4.1 120.2 1.0 CB A:ASN310 4.1 118.7 1.0 CB A:TYR89 4.1 122.5 1.0 CA A:THR92 4.3 120.2 1.0 CA A:ASN310 4.4 118.7 1.0 O A:TYR88 4.5 123.0 1.0 CB A:ASP312 4.5 118.7 1.0 CD1 A:TYR89 4.6 122.5 1.0 N A:LEU90 4.6 119.7 1.0 N A:THR92 4.6 120.2 1.0 N A:ASP312 4.7 118.7 1.0 N A:MET311 4.7 118.8 1.0 N A:TYR89 4.8 122.5 1.0 CG A:TYR89 4.8 122.5 1.0 CG2 A:THR92 4.8 120.2 1.0 CA A:ASP312 4.9 118.7 1.0 C A:ASN310 4.9 118.7 1.0 O A:THR92 4.9 120.2 1.0

Y.Huang, K.Reddy, C.Bracken, W.Zhan, D.Eliezer, O.Boudker. Environmentally Ultrasensitive Monofluoroethyl uc(Nmr) Probe For Monitoring Membrane Protein To Be Published.