Sodium in PDB 7ugj: Tboa-Bound Gltph Rsmr Mutant in Ofs State

The structure of Tboa-Bound Gltph Rsmr Mutant in Ofs State also contains other interesting chemical elements:

Fluorine

(F)

1 atom

The binding sites of Sodium atom in the Tboa-Bound Gltph Rsmr Mutant in Ofs State (pdb code 7ugj). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Tboa-Bound Gltph Rsmr Mutant in Ofs State, PDB code: 7ugj:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Tboa-Bound Gltph Rsmr Mutant in Ofs State


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Tboa-Bound Gltph Rsmr Mutant in Ofs State within 5.0Å range: probe atom residue distance (Å) B Occ A:Na502 b:100.9 occ:1.00 O A:ASN401 2.5 99.3 1.0 O A:ASN310 2.6 100.4 1.0 OD1 A:ASP405 2.7 94.8 1.0 OD2 A:ASP405 2.8 94.8 1.0 CG A:ASP405 2.9 94.8 1.0 CB A:ASN310 3.3 100.4 1.0 C A:ASN401 3.3 99.3 1.0 O A:GLY306 3.3 90.0 1.0 C A:ASN310 3.4 100.4 1.0 CG A:ASN310 3.4 100.4 1.0 ND2 A:ASN310 3.7 100.4 1.0 CA A:ASN401 3.7 99.3 1.0 CB A:ASN401 3.9 99.3 1.0 CA A:ASN310 3.9 100.4 1.0 OD1 A:ASN310 4.0 100.4 1.0 C A:GLY306 4.1 90.0 1.0 CB A:ASP405 4.2 94.8 1.0 N A:ASP405 4.3 94.8 1.0 N A:VAL402 4.4 97.7 1.0 N A:MET311 4.4 106.5 1.0 N A:ASN310 4.7 100.4 1.0 CA A:ASP405 4.7 94.8 1.0 CA A:MET311 4.8 106.5 1.0 CA A:VAL402 4.8 97.7 1.0 N A:ALA307 4.8 88.8 1.0 CA A:ALA307 4.8 88.8 1.0 CG A:ASN401 4.9 99.3 1.0 CA A:GLY306 4.9 90.0 1.0 C A:GLY404 5.0 94.9 1.0

Sodium binding site 2 out of 2 in the Tboa-Bound Gltph Rsmr Mutant in Ofs State


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Tboa-Bound Gltph Rsmr Mutant in Ofs State within 5.0Å range: probe atom residue distance (Å) B Occ A:Na503 b:105.0 occ:1.00 OG1 A:THR92 2.3 103.9 1.0 OD1 A:ASN310 2.5 100.4 1.0 O A:TYR89 2.6 98.3 1.0 OD1 A:ASP312 3.0 108.2 1.0 CG A:ASN310 3.0 100.4 1.0 OG A:SER93 3.0 105.1 1.0 CA A:TYR89 3.1 98.3 1.0 C A:TYR89 3.2 98.3 1.0 ND2 A:ASN310 3.3 100.4 1.0 OD2 A:ASP312 3.6 108.2 1.0 CB A:TYR89 3.6 98.3 1.0 CD1 A:TYR89 3.7 98.3 1.0 CG A:ASP312 3.7 108.2 1.0 N A:SER93 3.7 105.1 1.0 CB A:THR92 3.7 103.9 1.0 CB A:SER93 4.1 105.1 1.0 CG A:TYR89 4.1 98.3 1.0 CB A:ASN310 4.1 100.4 1.0 O A:TYR88 4.1 96.7 1.0 N A:TYR89 4.3 98.3 1.0 C A:THR92 4.3 103.9 1.0 CA A:SER93 4.3 105.1 1.0 CA A:THR92 4.4 103.9 1.0 N A:LEU90 4.5 102.6 1.0 CA A:ASN310 4.5 100.4 1.0 C A:TYR88 4.6 96.7 1.0 N A:THR92 4.6 103.9 1.0 CG2 A:THR92 4.7 103.9 1.0 CE1 A:TYR89 4.7 98.3 1.0 CE2 A:TYR88 4.9 96.7 1.0

Y.Huang, K.Reddy, B.Qiu, W.Zhan, C.Bracken, D.Eliezer, O.Boudker. An Environmentally Ultrasensitive Fluorine Probe to Resolve Protein Conformational Ensembles By 19F uc(Nmr) and Cryo-Em To Be Published.