Sodium in PDB 7ug0: Tboa-Bound Gltph Rsmr Mutant in Ifs State

The structure of Tboa-Bound Gltph Rsmr Mutant in Ifs State also contains other interesting chemical elements:

Fluorine

(F)

1 atom

The binding sites of Sodium atom in the Tboa-Bound Gltph Rsmr Mutant in Ifs State (pdb code 7ug0). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Tboa-Bound Gltph Rsmr Mutant in Ifs State, PDB code: 7ug0:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Tboa-Bound Gltph Rsmr Mutant in Ifs State


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Tboa-Bound Gltph Rsmr Mutant in Ifs State within 5.0Å range: probe atom residue distance (Å) B Occ A:Na502 b:84.7 occ:1.00 O A:ASN310 2.5 83.0 1.0 O A:ASN401 2.7 85.0 1.0 OD1 A:ASP405 2.7 87.0 1.0 O A:GLY306 3.1 85.7 1.0 CG A:ASP405 3.3 87.0 1.0 OD2 A:ASP405 3.3 87.0 1.0 C A:ASN401 3.3 85.0 1.0 C A:ASN310 3.7 83.0 1.0 CB A:ASN401 3.7 85.0 1.0 C A:GLY306 3.9 85.7 1.0 CA A:ASN401 3.9 85.0 1.0 CA A:ALA307 4.0 86.2 1.0 O A:HOH603 4.1 82.9 1.0 N A:VAL402 4.2 86.2 1.0 O A:HOH601 4.2 92.7 1.0 N A:ALA307 4.3 86.2 1.0 CB A:ASN310 4.3 83.0 1.0 CA A:VAL402 4.5 86.2 1.0 CB A:ASP405 4.5 87.0 1.0 CA A:ASN310 4.5 83.0 1.0 OG A:SER278 4.6 98.7 1.0 C A:ALA307 4.6 86.2 1.0 ND2 A:ASN310 4.7 83.0 1.0 N A:MET311 4.7 87.4 1.0 CG A:ASN401 4.7 85.0 1.0 CG A:ASN310 4.7 83.0 1.0 O A:ALA307 4.8 86.2 1.0 CA A:MET311 4.8 87.4 1.0 CG A:MET311 4.8 87.4 1.0 CA A:GLY306 4.9 85.7 1.0 N A:ASN310 4.9 83.0 1.0 CB A:SER278 5.0 98.7 1.0

Sodium binding site 2 out of 2 in the Tboa-Bound Gltph Rsmr Mutant in Ifs State


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Tboa-Bound Gltph Rsmr Mutant in Ifs State within 5.0Å range: probe atom residue distance (Å) B Occ A:Na503 b:83.4 occ:1.00 OD1 A:ASN310 2.5 83.0 1.0 OG A:SER93 2.5 78.5 1.0 OG1 A:THR92 2.5 79.5 1.0 O A:TYR89 2.5 78.2 1.0 OD1 A:ASP312 2.5 84.6 1.0 N A:SER93 2.9 78.5 1.0 CB A:SER93 3.4 78.5 1.0 CB A:THR92 3.5 79.5 1.0 CA A:SER93 3.5 78.5 1.0 C A:TYR89 3.5 78.2 1.0 CG A:ASP312 3.5 84.6 1.0 C A:THR92 3.5 79.5 1.0 CG A:ASN310 3.7 83.0 1.0 OD2 A:ASP312 3.8 84.6 1.0 CA A:TYR89 3.8 78.2 1.0 CA A:THR92 4.0 79.5 1.0 O A:THR92 4.3 79.5 1.0 N A:THR92 4.3 79.5 1.0 ND2 A:ASN310 4.4 83.0 1.0 O A:TYR88 4.5 80.3 1.0 CB A:TYR89 4.6 78.2 1.0 CA A:ASN310 4.7 83.0 1.0 CB A:ASN310 4.7 83.0 1.0 N A:LEU90 4.7 76.4 1.0 N A:MET311 4.8 87.4 1.0 CG2 A:THR92 4.8 79.5 1.0 CB A:ASP312 4.8 84.6 1.0 N A:ASP312 4.9 84.6 1.0 C A:SER93 5.0 78.5 1.0 CD1 A:TYR89 5.0 78.2 1.0

Y.Huang, O.Boudker. An Environmentally Ultrasensitive Fluorine Probe to Resolve Protein Conformational Ensembles By 19F uc(Nmr) and Cryo-Em To Be Published.