Sodium in PDB 7si5: Crystal Structure of Eed with Mrtx-1919

The structure of Crystal Structure of Eed with Mrtx-1919, PDB code: 7si5 was solved by R.J.Gunn, A.C.Burns, J.D.Lawson, M.A.Marx, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.97 / 1.75
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	57.86, 85.03, 91.92, 90, 90, 90
R / Rfree (%)	15.1 / 18.7

The structure of Crystal Structure of Eed with Mrtx-1919 also contains other interesting chemical elements:

Fluorine

(F)

1 atom

The binding sites of Sodium atom in the Crystal Structure of Eed with Mrtx-1919 (pdb code 7si5). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of Eed with Mrtx-1919, PDB code: 7si5:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of Eed with Mrtx-1919


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Eed with Mrtx-1919 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na501 b:35.0 occ:1.00 O A:HOH847 2.3 34.4 1.0 O A:HOH888 2.4 41.1 1.0 O A:HOH903 2.4 41.0 1.0 O A:SER87 2.4 0.7 1.0 O A:HOH902 2.4 43.9 1.0 OD1 A:ASN86 2.5 5.2 1.0 O A:HOH782 3.4 49.0 1.0 CG A:ASN86 3.5 6.9 1.0 C A:SER87 3.6 1.9 1.0 N A:SER87 3.9 0.8 1.0 ND2 A:ASN86 4.0 7.0 1.0 CA A:SER87 4.4 0.4 1.0 O A:HOH649 4.5 39.0 1.0 N A:LEU88 4.6 1.8 1.0 O A:HOH911 4.6 53.3 1.0 OG A:SER87 4.6 3.4 1.0 CA A:LEU88 4.7 5.1 1.0 CB A:LEU88 4.7 15.4 1.0 CB A:ASN86 4.8 2.1 1.0 C A:ASN86 5.0 0.3 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of Eed with Mrtx-1919


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Eed with Mrtx-1919 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na502 b:34.7 occ:1.00 O A:PRO282 2.3 11.1 1.0 O A:THR285 2.4 3.7 1.0 O A:HOH781 2.5 32.5 1.0 O A:HOH915 2.5 45.2 1.0 O2 A:FMT510 2.5 52.5 1.0 O A:HOH909 3.5 64.5 1.0 C A:PRO282 3.5 6.1 1.0 C A:THR285 3.6 7.1 1.0 C A:FMT510 3.7 56.7 1.0 O A:HOH808 4.2 41.0 1.0 N A:THR285 4.3 1.7 1.0 CA A:ASN286 4.4 0.0 1.0 CA A:PRO282 4.4 5.7 1.0 N A:ASN283 4.4 7.7 1.0 CA A:ASN283 4.4 6.2 1.0 N A:ASN286 4.5 3.2 1.0 C A:ASN283 4.6 2.9 1.0 CA A:THR285 4.6 0.0 1.0 O1 A:FMT510 4.6 60.2 1.0 O A:ASN283 4.8 7.1 1.0 CB A:PRO282 4.9 7.1 1.0 N A:LYS284 4.9 3.6 1.0

A.C.Burns, R.J.Gunn, A.C.Burns, J.D.Lawson, M.A.Marx. N/A N/A.