Sodium in PDB 7s7e: Structure of Hla-B*07:02 in Complex with DOT1L(998-1006) Peptide

All present enzymatic activity of Structure of Hla-B*07:02 in Complex with DOT1L(998-1006) Peptide:
2.1.1.360;

The structure of Structure of Hla-B*07:02 in Complex with DOT1L(998-1006) Peptide, PDB code: 7s7e was solved by L.Patskovska, Y.Patskovsky, S.Nyovanie, A.Natarajan, B.Joshi, B.Morin, C.Brittsan, O.Huber, S.Gordon, X.Michelet, F.Schmitzberger, R.Stein, M.Findeis, A.Hurwitz, M.Van Dijk, J.Buell, D.Underwood, M.Krogsgaard, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.20 / 2.04
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	65.299, 65.299, 238.531, 90, 90, 90
R / Rfree (%)	17.2 / 23.5

The binding sites of Sodium atom in the Structure of Hla-B*07:02 in Complex with DOT1L(998-1006) Peptide (pdb code 7s7e). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of Hla-B*07:02 in Complex with DOT1L(998-1006) Peptide, PDB code: 7s7e:

Sodium binding site 1 out of 1 in the Structure of Hla-B*07:02 in Complex with DOT1L(998-1006) Peptide


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Hla-B*07:02 in Complex with DOT1L(998-1006) Peptide within 5.0Å range: probe atom residue distance (Å) B Occ B:Na101 b:43.8 occ:1.00 O B:LEU87 2.2 36.5 1.0 O B:HOH291 2.4 50.6 1.0 O B:HOH202 2.4 39.7 1.0 O B:HIS84 2.6 27.6 1.0 C B:LEU87 3.4 37.9 1.0 C B:HIS84 3.6 25.7 1.0 OD1 B:ASN83 4.0 56.7 1.0 N B:HIS84 4.1 25.7 1.0 N B:LEU87 4.2 36.4 1.0 CA B:LEU87 4.2 33.9 1.0 CA B:VAL85 4.3 30.0 1.0 N B:VAL85 4.3 29.2 1.0 CB B:LEU87 4.3 33.0 1.0 O B:VAL85 4.3 31.4 1.0 C B:VAL85 4.3 36.2 1.0 N B:SER88 4.5 39.0 1.0 CA B:HIS84 4.5 32.0 1.0 O B:HOH303 4.6 52.4 1.0 C B:SER88 4.7 40.0 1.0 CA B:SER88 4.7 41.2 1.0 N B:GLN89 4.8 37.0 1.0 O B:SER88 5.0 41.5 1.0 CG B:ASN83 5.0 61.1 1.0

L.Patskovska, Y.Patskovsky, S.Nyovanie, A.Nataragan, B.Joshi, B.Morin, C.Brittsan, O.Huber, S.Gordon, X.Michelet, F.Schmitzberger, R.Stein, M.Findeis, A.Hurwitz, M.Van Dijk, J.Buell, D.Underwood, M.Krogsgaard. Crystal Structure of Hla-B*07:02 in Complex with DOT1L(998-1006) Peptide and Phosphopeptide To Be Published.