Sodium in PDB 7s79: Structure of Hla-B*07:02 in Complex with Synthetic Phosphono-Mll Peptide Analog

The structure of Structure of Hla-B*07:02 in Complex with Synthetic Phosphono-Mll Peptide Analog, PDB code: 7s79 was solved by L.Patskovska, Y.Patskovsky, S.Nyovanie, A.Natarajan, B.Joshi, B.Morin, C.Brittsan, O.Huber, S.Gordon, X.Michelet, F.Schmitzberger, R.Stein, M.Findeis, A.Hurwitz, M.Van Dijk, J.Buell, D.Underwood, M.Krogsgaard, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.25 / 1.53
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	65.86, 65.86, 238.857, 90, 90, 90
R / Rfree (%)	17 / 19.6

The binding sites of Sodium atom in the Structure of Hla-B*07:02 in Complex with Synthetic Phosphono-Mll Peptide Analog (pdb code 7s79). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of Hla-B*07:02 in Complex with Synthetic Phosphono-Mll Peptide Analog, PDB code: 7s79:

Sodium binding site 1 out of 1 in the Structure of Hla-B*07:02 in Complex with Synthetic Phosphono-Mll Peptide Analog


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Hla-B*07:02 in Complex with Synthetic Phosphono-Mll Peptide Analog within 5.0Å range: probe atom residue distance (Å) B Occ B:Na103 b:44.3 occ:1.00 O B:HOH287 2.3 55.3 1.0 O B:HOH206 2.3 30.6 1.0 O B:HOH321 2.3 47.9 1.0 O B:LEU87 2.5 28.7 1.0 O B:HIS84 2.6 19.8 1.0 C B:HIS84 3.6 18.4 1.0 C B:LEU87 3.6 25.9 1.0 N B:HIS84 4.0 19.8 1.0 N B:LEU87 4.1 22.1 1.0 CA B:LEU87 4.2 22.8 1.0 CB B:LEU87 4.2 22.8 1.0 CA B:VAL85 4.3 18.2 1.0 N B:VAL85 4.4 19.2 1.0 C B:VAL85 4.4 22.2 1.0 O B:VAL85 4.5 23.7 1.0 OD1 B:ASN83 4.5 33.6 1.0 CA B:HIS84 4.5 18.8 1.0 O B:HOH328 4.6 45.4 1.0 N B:SER88 4.7 26.6 1.0 C B:SER88 4.7 27.8 1.0 CA B:SER88 4.8 26.5 1.0 C B:ASN83 4.9 22.1 1.0 O B:SER88 4.9 32.3 1.0 N B:GLN89 5.0 25.8 1.0 CB B:ASN83 5.0 23.4 1.0

L.Patskovska, Y.Patskovsky, S.Nyovanie, A.Nataragan, B.Joshi, B.Morin, C.Brittsan, O.Huber, S.Gordon, X.Michelet, F.Schmitzberger, R.Stein, M.Findeis, A.Hurwitz, M.Van Dijk, J.Buell, D.Underwood, M.Krogsgaard. Crystal Structure of Hla-B*07:02 in Complex with Mll(747-755) Peptide and Its Analogs To Be Published.