Sodium in PDB 7s44: Crystal Structure of An N-Acetyltransferase, C80T Mutant, From Helicobacter Pullorum in the Presence of Coenzyme A and Dtdp-3-Amino- 3,6-Dideoxy-D-Galactose

Protein crystallography data

The structure of Crystal Structure of An N-Acetyltransferase, C80T Mutant, From Helicobacter Pullorum in the Presence of Coenzyme A and Dtdp-3-Amino- 3,6-Dideoxy-D-Galactose, PDB code: 7s44 was solved by W.A.Griffiths, K.D.Spencer, J.B.Thoden, H.M.Holden, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.74 / 1.40
Space group I 2 3
Cell size a, b, c (Å), α, β, γ (°) 103.731, 103.731, 103.731, 90, 90, 90
R / Rfree (%) 16.5 / 18.3

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of An N-Acetyltransferase, C80T Mutant, From Helicobacter Pullorum in the Presence of Coenzyme A and Dtdp-3-Amino- 3,6-Dideoxy-D-Galactose (pdb code 7s44). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of An N-Acetyltransferase, C80T Mutant, From Helicobacter Pullorum in the Presence of Coenzyme A and Dtdp-3-Amino- 3,6-Dideoxy-D-Galactose, PDB code: 7s44:

Sodium binding site 1 out of 1 in 7s44

Go back to Sodium Binding Sites List in 7s44
Sodium binding site 1 out of 1 in the Crystal Structure of An N-Acetyltransferase, C80T Mutant, From Helicobacter Pullorum in the Presence of Coenzyme A and Dtdp-3-Amino- 3,6-Dideoxy-D-Galactose


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of An N-Acetyltransferase, C80T Mutant, From Helicobacter Pullorum in the Presence of Coenzyme A and Dtdp-3-Amino- 3,6-Dideoxy-D-Galactose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na206

b:6.7
occ:0.33
OD1 A:ASN108 2.4 2.8 1.0
O A:HOH310 2.4 14.3 1.0
CG A:ASN108 3.3 2.8 1.0
ND2 A:ASN108 3.6 2.9 1.0
CB A:ASN76 4.2 5.2 1.0
O A:ASN76 4.2 4.0 1.0
CB A:ASN108 4.7 2.7 1.0
OG1 A:THR78 4.8 4.5 1.0
CG A:ASN76 4.9 6.7 1.0

Reference:

W.A.Griffiths, K.D.Spencer, J.B.Thoden, H.M.Holden. Biochemical Investigation of An N-Acetyltransferase From Helicobacter Pullorum To Be Published.
Page generated: Fri Sep 24 16:30:14 2021

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