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Sodium in PDB 7ol7: Crystal Structure of Lysozyme in Complex with Trifluoroethanol: Tetragonal Form

Enzymatic activity of Crystal Structure of Lysozyme in Complex with Trifluoroethanol: Tetragonal Form

All present enzymatic activity of Crystal Structure of Lysozyme in Complex with Trifluoroethanol: Tetragonal Form:
3.2.1.17;

Protein crystallography data

The structure of Crystal Structure of Lysozyme in Complex with Trifluoroethanol: Tetragonal Form, PDB code: 7ol7 was solved by A.Camara-Artigas, M.C.Salinas-Garcia, M.Plaza-Garrido, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.05 / 1.15
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.547, 78.547, 37.332, 90, 90, 90
R / Rfree (%) 15.4 / 17.4

Other elements in 7ol7:

The structure of Crystal Structure of Lysozyme in Complex with Trifluoroethanol: Tetragonal Form also contains other interesting chemical elements:

Chlorine (Cl) 5 atoms
Fluorine (F) 6 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Lysozyme in Complex with Trifluoroethanol: Tetragonal Form (pdb code 7ol7). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Lysozyme in Complex with Trifluoroethanol: Tetragonal Form, PDB code: 7ol7:

Sodium binding site 1 out of 1 in 7ol7

Go back to Sodium Binding Sites List in 7ol7
Sodium binding site 1 out of 1 in the Crystal Structure of Lysozyme in Complex with Trifluoroethanol: Tetragonal Form


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Lysozyme in Complex with Trifluoroethanol: Tetragonal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na206

b:19.1
occ:1.00
 O A:SER60 2.3 17.7 1.0
O A:HOH391 2.4 20.5 1.0
O A:CYS64 2.4 14.9 1.0
O A:HOH373 2.4 16.4 1.0
OG A:SER72 2.4 21.2 1.0
O A:ARG73 2.5 21.4 1.0
HB2 A:SER72 3.0 26.1 1.0
HA A:ASN65 3.0 17.9 1.0
CB A:SER72 3.2 21.7 1.0
C A:SER60 3.4 15.6 1.0
HB2 A:SER60 3.5 17.3 1.0
C A:CYS64 3.5 14.2 1.0
C A:ARG73 3.5 20.9 1.0
HB A:THR69 3.7 18.6 1.0
HA A:SER60 3.8 16.5 1.0
HB3 A:SER72 3.9 26.1 1.0
H A:CYS64 3.9 17.5 1.0
CA A:ASN65 3.9 14.9 1.0
HB2 A:ASN74 3.9 22.9 1.0
N A:ARG73 4.0 24.0 1.0
H A:ASP66 4.0 16.8 1.0
CA A:SER60 4.0 13.7 1.0
HA A:ASN74 4.1 22.5 1.0
H A:ARG73 4.1 28.8 1.0
C A:SER72 4.1 24.3 1.0
N A:ASN65 4.2 14.6 1.0
CB A:SER60 4.2 14.4 1.0
CA A:SER72 4.3 23.0 1.0
N A:ASN74 4.4 19.7 1.0
CA A:ARG73 4.4 22.4 1.0
N A:ARG61 4.4 17.3 1.0
HA A:ARG61 4.5 24.2 1.0
N A:CYS64 4.5 14.6 1.0
C A:ARG61 4.5 19.3 1.0
CA A:ASN74 4.5 18.8 1.0
CA A:CYS64 4.6 14.9 1.0
CB A:THR69 4.6 15.5 1.0
HB2 A:ASN65 4.6 19.9 1.0
N A:ASP66 4.7 14.0 1.0
O A:SER72 4.7 26.2 1.0
OD1 A:ASN65 4.7 19.8 1.0
HG21 A:THR69 4.7 20.4 1.0
CB A:ASN74 4.7 19.0 1.0
CL A:CL204 4.7 22.6 1.0
O A:ARG61 4.7 21.1 1.0
CA A:ARG61 4.7 20.1 1.0
HA A:ARG73 4.8 26.9 1.0
H A:TRP63 4.8 17.9 1.0
N A:TRP62 4.8 17.9 1.0
CB A:ASN65 4.8 16.5 1.0
C A:ASN65 4.9 13.3 1.0
HB3 A:SER60 4.9 17.3 1.0
HA A:SER72 4.9 27.6 1.0
O A:THR69 4.9 19.1 1.0
H A:ASN65 5.0 17.5 1.0
O A:HOH409 5.0 31.9 1.0

Reference:

A.Camara-Artigas, M.C.Salinas-Garcia, M.Plaza-Garrido. Crystal Structure of Lysozyme in Complex with Tfe To Be Published.
Page generated: Tue Oct 8 18:21:07 2024

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