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Sodium in PDB 7odi: Crystal Structure of Bovine HSC70(AA1-554)E213A/D214A in Complex with Methanesulfonamide

Protein crystallography data

The structure of Crystal Structure of Bovine HSC70(AA1-554)E213A/D214A in Complex with Methanesulfonamide, PDB code: 7odi was solved by M.Zehe, C.Grimm, C.Sotriffer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.87 / 1.83
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 65.847, 49.566, 86.716, 90, 99.84, 90
R / Rfree (%) 23 / 24.5

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Bovine HSC70(AA1-554)E213A/D214A in Complex with Methanesulfonamide (pdb code 7odi). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Bovine HSC70(AA1-554)E213A/D214A in Complex with Methanesulfonamide, PDB code: 7odi:

Sodium binding site 1 out of 1 in 7odi

Go back to Sodium Binding Sites List in 7odi
Sodium binding site 1 out of 1 in the Crystal Structure of Bovine HSC70(AA1-554)E213A/D214A in Complex with Methanesulfonamide


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Bovine HSC70(AA1-554)E213A/D214A in Complex with Methanesulfonamide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na606

b:59.4
occ:1.00
O A:HOH716 2.1 36.3 1.0
O A:HOH866 2.1 55.6 1.0
O02 A:V7Z603 2.2 73.8 1.0
O A:HOH701 2.2 42.8 1.0
O A:HOH704 2.2 40.9 1.0
O A:HOH798 2.4 36.7 1.0
S01 A:V7Z603 3.2 73.8 1.0
O03 A:V7Z603 3.4 68.8 1.0
OD2 A:ASP199 4.0 40.9 1.0
OD1 A:ASP199 4.0 32.9 1.0
N04 A:V7Z603 4.1 48.9 1.0
O A:HOH791 4.2 40.6 1.0
OE2 A:GLU175 4.2 37.8 1.0
OD2 A:ASP10 4.3 36.4 1.0
CG A:ASP199 4.4 34.6 1.0
OD1 A:ASP10 4.4 34.3 1.0
C05 A:V7Z603 4.6 48.9 1.0
O A:HOH715 4.6 47.1 1.0
CG A:ASP10 4.8 38.7 1.0
CD A:GLU175 4.8 35.6 1.0

Reference:

M.Zehe, C.Schollmayer, J.Kehrein, C.Plank, H.Kovacs, C.Grimm, C.Sotriffer. Combined in-Solution and Crystallographic Fragment Screening on A Two-Domain HSP70 Construct To Be Published.
Page generated: Tue Oct 8 18:19:15 2024

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