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Sodium in PDB 7nkf: Hen Egg White Lysozyme (Hewl) Grown Inside (Not Centrifuged) Hare Serial Crystallography Chip.

Enzymatic activity of Hen Egg White Lysozyme (Hewl) Grown Inside (Not Centrifuged) Hare Serial Crystallography Chip.

All present enzymatic activity of Hen Egg White Lysozyme (Hewl) Grown Inside (Not Centrifuged) Hare Serial Crystallography Chip.:
3.2.1.17;

Protein crystallography data

The structure of Hen Egg White Lysozyme (Hewl) Grown Inside (Not Centrifuged) Hare Serial Crystallography Chip., PDB code: 7nkf was solved by B.Norton-Baker, P.Mehrabi, J.Boger, R.Schonherr, D.Von Stetten, H.Schikora, R.W.Martin, R.J.D.Miller, L.Redecke, E.C.Schulz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.72 / 1.70
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.8, 78.8, 38.7, 90, 90, 90
R / Rfree (%) 17.5 / 21.2

Sodium Binding Sites:

The binding sites of Sodium atom in the Hen Egg White Lysozyme (Hewl) Grown Inside (Not Centrifuged) Hare Serial Crystallography Chip. (pdb code 7nkf). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Hen Egg White Lysozyme (Hewl) Grown Inside (Not Centrifuged) Hare Serial Crystallography Chip., PDB code: 7nkf:

Sodium binding site 1 out of 1 in 7nkf

Go back to Sodium Binding Sites List in 7nkf
Sodium binding site 1 out of 1 in the Hen Egg White Lysozyme (Hewl) Grown Inside (Not Centrifuged) Hare Serial Crystallography Chip.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Hen Egg White Lysozyme (Hewl) Grown Inside (Not Centrifuged) Hare Serial Crystallography Chip. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na201

b:19.2
occ:1.00
 O A:CYS64 2.4 15.9 1.0
O A:SER60 2.4 18.2 1.0
O A:HOH369 2.4 26.9 1.0
O A:ARG73 2.5 28.9 1.0
OG A:SER72 2.6 29.2 1.0
O A:HOH358 2.6 24.6 1.0
CB A:SER72 3.3 29.3 1.0
C A:CYS64 3.4 12.9 1.0
C A:ARG73 3.5 24.4 1.0
C A:SER60 3.6 15.1 1.0
CA A:ASN65 3.9 15.1 1.0
N A:ARG73 4.0 23.7 1.0
N A:ASN65 4.1 14.7 1.0
C A:SER72 4.1 32.4 1.0
CA A:SER60 4.2 13.6 1.0
N A:CYS64 4.3 13.8 1.0
CA A:ARG73 4.3 24.5 1.0
CA A:SER72 4.4 33.4 1.0
N A:ASN74 4.4 23.1 1.0
CB A:SER60 4.4 14.2 1.0
O A:ARG61 4.5 24.9 1.0
C A:ARG61 4.5 24.4 1.0
CA A:ASN74 4.5 21.3 1.0
CA A:CYS64 4.5 14.5 1.0
N A:ARG61 4.6 16.2 1.0
O A:SER72 4.6 29.1 1.0
CB A:ASN74 4.6 18.4 1.0
O A:HOH370 4.7 40.7 1.0
CA A:ARG61 4.7 20.8 1.0
CB A:ASN65 4.7 17.1 1.0
O A:HOH367 4.7 25.4 1.0
CB A:THR69 4.8 20.6 1.0
N A:TRP62 4.8 17.0 1.0
N A:ASP66 4.8 14.0 1.0
N A:TRP63 4.9 14.7 1.0
OD1 A:ASN65 4.9 29.5 1.0
C A:ASN65 4.9 14.0 1.0
O A:THR69 4.9 27.8 1.0
C A:TRP62 5.0 20.8 1.0

Reference:

B.Norton-Baker, P.Mehrabi, J.Boger, R.Schonherr, D.Von Stetten, H.Schikora, A.O.Kwok, R.W.Martin, R.J.D.Miller, L.Redecke, E.C.Schulz. A Simple Vapor-Diffusion Method Enables Protein Crystallization Inside the Hare Serial Crystallography Chip. Acta Crystallogr D Struct V. 77 820 2021BIOL.
ISSN: ISSN 2059-7983
PubMed: 34076595
DOI: 10.1107/S2059798321003855
Page generated: Tue Oct 8 18:10:26 2024

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