Sodium in PDB 7n27: Crystal Structure of Chromodomain of Cdyl in Complex with Inhibitor UNC6261

Protein crystallography data

The structure of Crystal Structure of Chromodomain of Cdyl in Complex with Inhibitor UNC6261, PDB code: 7n27 was solved by S.Beldar, A.Dong, P.Loppnau, J.Min, C.H.Arrowsmith, A.M.Edwards, Structuralgenomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.64 / 1.85
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 62.971, 76.386, 80.628, 90, 90, 90
R / Rfree (%) 22.5 / 26.2

Other elements in 7n27:

The structure of Crystal Structure of Chromodomain of Cdyl in Complex with Inhibitor UNC6261 also contains other interesting chemical elements:

Fluorine (F) 30 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Chromodomain of Cdyl in Complex with Inhibitor UNC6261 (pdb code 7n27). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of Chromodomain of Cdyl in Complex with Inhibitor UNC6261, PDB code: 7n27:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in 7n27

Go back to Sodium Binding Sites List in 7n27
Sodium binding site 1 out of 2 in the Crystal Structure of Chromodomain of Cdyl in Complex with Inhibitor UNC6261


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Chromodomain of Cdyl in Complex with Inhibitor UNC6261 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na201

b:40.2
occ:1.00
O A:GLU89 2.6 36.5 1.0
C A:GLU89 3.8 37.1 1.0
N A:ASP90 4.7 33.1 1.0
CA A:ASP90 4.7 31.8 1.0
CA A:GLU89 4.8 36.0 1.0
O A:ASP91 5.0 27.0 1.0
OD1 A:ASP90 5.0 39.6 1.0

Sodium binding site 2 out of 2 in 7n27

Go back to Sodium Binding Sites List in 7n27
Sodium binding site 2 out of 2 in the Crystal Structure of Chromodomain of Cdyl in Complex with Inhibitor UNC6261


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Chromodomain of Cdyl in Complex with Inhibitor UNC6261 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Na201

b:22.8
occ:1.00
O D:HOH315 2.4 22.0 1.0
O D:VAL63 2.4 17.2 1.0
O D:HOH316 2.4 28.9 1.0
OH D:TYR105 2.5 18.0 1.0
CZ D:TYR105 3.6 17.6 1.0
C D:VAL63 3.6 18.9 1.0
CE2 D:TYR105 3.8 16.8 1.0
O J:HOH1101 3.9 28.4 1.0
CA D:GLU64 4.0 20.3 1.0
O D:GLU64 4.0 21.2 1.0
N D:GLU64 4.2 19.3 1.0
C D:GLU64 4.3 20.4 1.0
CG D:GLU62 4.7 26.2 1.0
CA D:VAL63 4.8 18.2 1.0
N D:VAL63 4.8 18.5 1.0
CE1 D:TYR105 4.8 18.5 1.0
O1 J:MN11000 4.9 18.4 1.0
C5 J:MN11000 4.9 17.8 1.0

Reference:

S.Beldar, A.Dong, P.Loppnau, J.Min, C.H.Arrowsmith, A.M.Edwards, Structural Genomics Consortium (Sgc). Crystal Structure of Chromodomain of Cdyl in Complex with Inhibitor UNC6261 To Be Published.
Page generated: Sat Aug 21 17:23:55 2021

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