Sodium in PDB 7mzb: Cryo-Em Structure of Minimal TRPV1 with 3 Bound Rtx and 1 Perturbed Pi

The binding sites of Sodium atom in the Cryo-Em Structure of Minimal TRPV1 with 3 Bound Rtx and 1 Perturbed Pi (pdb code 7mzb). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Cryo-Em Structure of Minimal TRPV1 with 3 Bound Rtx and 1 Perturbed Pi, PDB code: 7mzb:

Sodium binding site 1 out of 1 in the Cryo-Em Structure of Minimal TRPV1 with 3 Bound Rtx and 1 Perturbed Pi


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Cryo-Em Structure of Minimal TRPV1 with 3 Bound Rtx and 1 Perturbed Pi within 5.0Å range: probe atom residue distance (Å) B Occ B:Na902 b:79.0 occ:1.00 O C:GLY643 2.4 95.1 1.0 O D:GLY643 2.4 95.5 1.0 O B:GLY643 2.5 94.4 1.0 O A:GLY643 2.5 96.4 1.0 C C:GLY643 3.5 95.1 1.0 C B:GLY643 3.5 94.4 1.0 C D:GLY643 3.5 95.5 1.0 C A:GLY643 3.5 96.4 1.0 CA C:GLY643 3.9 95.1 1.0 CA B:GLY643 3.9 94.4 1.0 CA A:GLY643 3.9 96.4 1.0 CA D:GLY643 4.0 95.5 1.0 SD A:MET644 4.4 96.4 1.0 SD C:MET644 4.5 96.8 1.0 SD D:MET644 4.5 98.9 1.0 O A:ILE642 4.6 95.1 1.0 O D:ILE642 4.6 96.9 1.0 O C:ILE642 4.6 94.0 1.0 O B:ILE642 4.6 94.0 1.0 N C:MET644 4.7 96.8 1.0 N D:MET644 4.7 98.9 1.0 N B:MET644 4.7 96.4 1.0 SD B:MET644 4.7 96.4 1.0 N A:MET644 4.7 96.4 1.0 CG A:MET644 4.9 96.4 1.0 CG D:MET644 4.9 98.9 1.0

K.Zhang, D.Julius, Y.Cheng. Structural Snapshots of TRPV1 Reveal Mechanism of Polymodal Functionality. Cell 2021.
ISSN: ISSN 1097-4172
PubMed: 34496225
DOI: 10.1016/J.CELL.2021.08.012